RNA id: TU770784


Basic Information

Item Value
RNA id TU770784
length 1843
lncRNA type antisense_over
GC content 0.50
exon number 2
gene id G676722
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 14693866 ~ 14695835 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caaatgtttattAAATAATATGCAAAGCAAGAAAGTAGGTAGTATCACAGTGAGGAATATTGTCCACTGACATGTTTAAAAATATCAATAACATATATTGACGTATTGTCAATACATGCAGATTGGAATACACATAACAATCATATATAGATATtcatatatacatatttacaatCACAGAGACCAATAGTAACAGATACTGTAAGCACAACGCAAAGGCTTTGGCAAAAAGAGTGCATACATTTTGCTaaacattacatactgtatacatattACATGAGTAAACATAATTACATATAGAGATCAAGGAAGTACAAAACAAGCATAATTAAAAAATCCAGTGCAAGGTCAGTTTGTTTCTGTCCATGAATGTGTAGCAGCCTATGGTTTTGTTTCATTTTCTCCTTGGTCTTGTGTGGTCGGTGGTGGGATATTGTCCTGAGATGACCGTACGGCCTGGGAGCCCCAGCTAATTGGGGGAAGGGACTAGCACACTGAGAGGAAGTTTGGAGCCACTCGACAGGCCCTTAGATACCGTCATCTTGTGGAGGTCGCGGACTTCAGCCGGCCAAGTGGAGGTCCTCTTGGAGGTCATGTGTCGGCGAGCATGCTTGGTCAAGTGGTCGCTGCGCATGAAGCGCCGATCGCACACGTTACACACAAACTTCTTCTCACCGGTGTGTGTTCGCCTGTGGCGGGAGAGCTCATCGGAGCGGGCAAACTTCTTGTCGCAGCCCTCCCAGTGGCAGCTGAATGGTTTCTCACCTGGTCAGTGTGAGTTCTGAGATGAGCCTTGAGGTGGGAACTTTTGAAGTAGGTCTTCTTACAGCCGGGGAAGTTGCAGACGTAGTTCCGTCTGCGGGAGAAGTCTGCTTGTGTGGCATTGCTGCTCTGCCCTGAGGGCATGTAAACTGGAGCTGGGGCCAGGGGCAGAAGCTTTGTGTTACCCAGGGTCATTACAGTCTGTGCGCACGACGGAGCCTGGGACACGGGGGGCTGGGGAACCACAAACATCACCGTCCCCTGAGTCACCGAGGAGCCCACCAGCTGCAGCGACTGGGGGAAGGAGGGTGACTGGGGTAGTATGGGCTTGCCCCCCCCCTGGGTCATCTGGACTGGGCCTGCCTGGACGAATGCAGAGATCATCCCTGTCCGCCCATTGACTGGAAATACCTGGCAGAGGACCTGGGAGCTGGGAATGGGTGGTGAGGACTGGGAGGTGGCGATGGGCTGGGATGGGGACCTTTGGGTGGGAGTAGTAGAGGGGCCTGTGCTGCTGTCAGGTAAGGAAGGACTTCCTTGATCCTTCTCTACCTTAACACACAGACCAGTGCTGCAGCTCTGTGGTTCAGTCTGCATAGGAACGGCCTCAGCCAGAAGGGTTGCAGTAGGGTTTCTGTTGGAGTTGGTGTCTGTGTGCTGCCCTATGAGGGACTGAGGTGGAATGTTGTTGCTGTGCTGTGTGAGGGCCCTGTCAGCAGTGTGCCGGATGACGCTGGTCACCATGGCTCTGCTGGGCAGCTCTGGAGCTCCAGAGCTCTTGAAGATGGGGACCGTACCAGGTCGTTGGTCCAGGAGAAGGGCATTTTCGCAGGGAAGACCTGCACAGAGTCTAGGCCGGGTTAAGACTGGTCTGGGGCCTGAGCTGGCCAATGAGGTGGTGAGGACAGCTGTTGTGGTAGCGGTCTCGGTAAAGCTGGGGCTGTGAGGGGGGGTCATGCACtgggaaaaagaaagagaaacaggAATTAAACATTTGAACTGTCAAATGTGAAACAAACCAATATAATTCTCAATAAAAAAAAGCTTATTGTAGTTTTGATTGATTAAAATTAGTTTTggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU770775 lncRNA downstream 9781 14676954 ~ 14684085 (-) True G676717
TU770758 lncRNA downstream 57989 14633193 ~ 14635877 (-) True G676705
TU770737 lncRNA downstream 91084 14602515 ~ 14602782 (-) True G676691
TU770694 lncRNA downstream 160425 14533213 ~ 14533441 (-) True G676649
TU770693 lncRNA downstream 160914 14532700 ~ 14532952 (-) True G676648
TU770746 lncRNA upstream 2553 14698388 ~ 14706824 (-) True G676696
TU770825 lncRNA upstream 29841 14725676 ~ 14725935 (-) True G676753
TU770846 lncRNA upstream 78191 14774026 ~ 14774552 (-) True G676771
TU770899 lncRNA upstream 188527 14884362 ~ 14887465 (-) True G676822
TU771282 lncRNA upstream 337425 15033260 ~ 15033545 (-) True G677114
XM_021611616.2 mRNA downstream 120282 14549681 ~ 14573584 (-) True LOC110529446
XM_021611617.2 mRNA downstream 120309 14549681 ~ 14573557 (-) False LOC110529446
XM_036984827.1 mRNA downstream 222737 14396011 ~ 14471129 (-) False LOC110529444
XR_005052780.1 mRNA downstream 222737 14396011 ~ 14471129 (-) True LOC110529444
XM_036984826.1 mRNA downstream 306354 14342529 ~ 14387512 (-) True LOC110529441
XM_036984837.1 mRNA upstream 27937 14723772 ~ 14748492 (-) False LOC110529453
XM_036984841.1 mRNA upstream 27937 14723772 ~ 14748569 (-) False LOC110529453
XM_036984840.1 mRNA upstream 29059 14724894 ~ 14748492 (-) True LOC110529453
XM_021611627.2 mRNA upstream 60156 14755991 ~ 14850442 (-) False LOC110529452
XM_036984834.1 mRNA upstream 60156 14755991 ~ 14850442 (-) False LOC110529452
TU770677 other downstream 177338 14511590 ~ 14516528 (-) True G676635
TU770156 other downstream 405521 14287849 ~ 14288345 (-) True G676178
TU770045 other downstream 486241 14206987 ~ 14207625 (-) True G676077
TU769793 other downstream 707758 13983626 ~ 13986108 (-) False G675834
TU773511 other upstream 1736786 16432621 ~ 16433014 (-) True G679087
TU773640 other upstream 1929255 16625090 ~ 16630259 (-) False G679210
TU773642 other upstream 1929255 16625090 ~ 16630259 (-) True G679210
TU773944 other upstream 2417708 17113543 ~ 17114528 (-) True G679471
TU776244 other upstream 4095395 18791230 ~ 18792137 (-) True G681659

Expression Profile