RNA id: TU770899


Basic Information

Item Value
RNA id TU770899
length 3065
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G676822
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 14884362 ~ 14887465 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaggggtctgaaaactttccgaaggcactgtatatgacttATAAAGTAAGGTTACATCTCATTTGCCTACCCTTGGGAACGACTTTGCTAGCAACCTTGAATATATGTCATTATTAAGAGTTCTCCCAATAATCATTTTCACGGTAgcacattggtagtagtcagtgacaAACATCAAAGCGAAGCATGGCTTGGCTTGGATAAAACCCAGGATGGGAGACCAAATTAATAGCTGTTGATAGATCAACtgtccagtaggaggtgctgcccagactATAGTTGATTTTTTATAAACATTGAAGATCTGATGTTATTtcaaaaggtacaaattcaacatattttatacaaggtttgtctatgttgaaagtTGGTTACAATGAatacataatcctgtggttgaaagcTGACATATGGAGTTGTTTTAAGATCgccataccaaggatcatttggCTATTTTATTATGAATTTTTAGGACCCCTTCAGGCAACAATGATTTACTTagatttttttaatataaaataTTGAGTTGAAAATAATGTGCTGAGTAGAACATAGAACATTGATCTCAGGCATGAGTAGGTCTAGATGGCAGGGCTGCTCTTGTTTTGGAAAAGAGACATTGTGGCTACCTTTCTCCAGCGatttcagattttaaaaaatgttgttgtgtgtttGCTCACATgtcagcacatacagttgaagttagaagtttccatacacttagcttggagtcattaaaactcgttttccaaccactccacaaatttcttgttaacaaactatagttttagcaagtcagttaggacatctactttgtgcatgacacaagtaatttttccaaaaattgtttacagacagattatttcacttttcagaattcactgtatcccaattccagtgggtagaggtttacatacactaagttgattgtgcctttaactatcttggaaaattccagaaaatgatgtcatggctttagaagtttctgataggctaattgacatcatttgagtcaattggaggtgtacctgtggttgtttttcaaggcctacctccaaactcagtgcctctttgcttaagggggacaaagatagtacgttttggagaaatgggtcttccaaatggacaatgaccccaagcatacttccaaatggacaaatgACTTAAgaataacaaagtcaaggtattggagtggccatcacaaagccctgacctcaatcctataaaaaatgtgtgggcagaactgaaaagtgtgtgcgagcaaggaggcctacaaacctgactcagttacaccagctctgtcaagaggaatgggccaaaattcacccaacttattgtgggaagcttgtggaaggccacccgaaacgtttgacccaagttaaacaatgtaaaggcaatgctaccaaatactaattgagtgtatgtaaacttttgacccactgggaatgtgatgaaagaaataaaagctgaaataaatcattctctctactattattctgacatttcacattcttaaaataaagtggtgatccttactgacctaagaAAGGGCATTTTTacatggattaaatgtcaggaattgtgagaaacgGAGTTTAAAGgtattggctaaggtgtatgtaaacttccaacttcaattgtatttggctaaggtgtatgtaaacttccaacttcaattgtatttggctaaggtgtatgtaaacttccaacttcaattgtatttggctaaggtgtatgtaaacttccaacttcaattgtatttggctaaggtgtatgtaaacttccaacttcaattgtatttggctaaggtgtatgtaaacttccaacttcaattgtatttggctaagatgtaggtaaacttccaacttcaattgtatttggctaaggtgtatgtaaacttccaacttcaattgtatttggctaaggtgtatgtaaacttccaacttcaattgtATTATGCTCAGTTTTTCTTACTTGTATGGAAGATAACAAAAATAACTACAAGGGCTCCACTGGGAAAAGGTGAAATAATTGTAGTGTTTATTTTCACAAAGTTCACAAAGACTTTCCCAAGCAATGTTCATAAATTTGGTTCTGCCTGCGATCAGAGGAAAGTCTAAGGACAGTTGATGTCTCAGAGAACCAAGACTTTACTGTGCTCTCTTATCGATGTTCATGTTTTCAACATGGAATACAAATATCTAGATTCAAGAATaaggttaaaaataaatgtacctGATAATGCTTATGCTTCGCATTTTAAAAGAGGTCATGTGCACTTGTTGATAAAATATGGTTTATATATACTTTTTGTCTTTGAGAATGGCTTGTTTTATTATGATTCAGGACATAACTTTATTAATGAGTGAATTTACTGTGGATATCAGGTTCTCATTAAAACGCATGATTGTCAATCCACAAGTCAGTTCAACTTTAGTATGTTTTTGATTGTTAATTGCTCAAAAATGATTTGTTAAGCTGTCAACAAATGCTTTTGTTCAGCTGTCAACTTGTTCCATAATGGATGTCAGACCGAGAGTGTTGCTTACTACAATGAAGATAAATGGAACATGCATAACTGCAACAAAACATCATGATTGCAATATTCTATACTCTTTGAAAAAGATTCCAGAAGGCTTGTTTGGCTGTCCCTATAGGAGtgccctttttggttctaggtaaaaaaaactttttgtttccaggtagaaccattttagcttccatgtagaaccctctgtggaaagagttctacatggatCCCAAAACAGTTCTACTTGGTACCTAaatgattctacctggaaccaactaggattcttcaaagggttctcctatggggacaaccgaatatcccttttaggttctagatagcaccacTTTTTCCCCAAGAGTgtagtctgcctctctctctctctccaaacaatGGATGTGTAAAGGGACTTAGTATGCACAATGCTGTCTTCAGTCCACAAGTGGCAACAAAGCAAAACGCCTGTTACTGTGCAAAACAACTAAAGTTGTTGCTTTTTCTCTATAAAAGAATGTAAATATATCTGTAAGTGAAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU770846 lncRNA downstream 109810 14774026 ~ 14774552 (-) True G676771
TU770747 lncRNA downstream 137402 14615685 ~ 14746960 (-) False G676696
TU770825 lncRNA downstream 158427 14725676 ~ 14725935 (-) True G676753
TU770746 lncRNA downstream 177538 14698388 ~ 14706824 (-) True G676696
TU770784 lncRNA downstream 188527 14693866 ~ 14695835 (-) True G676722
TU771282 lncRNA upstream 145795 15033260 ~ 15033545 (-) True G677114
TU771287 lncRNA upstream 146524 15033989 ~ 15038853 (-) True si:ch73-111k22.3
TU771290 lncRNA upstream 151738 15039203 ~ 15039434 (-) True G677117
TU771297 lncRNA upstream 234499 15121964 ~ 15124406 (-) False LOC110529461
TU771298 lncRNA upstream 234499 15121964 ~ 15124406 (-) False LOC110529461
XM_036984835.1 mRNA downstream 33919 14755995 ~ 14850443 (-) True LOC110529452
XM_021611627.2 mRNA downstream 33920 14755991 ~ 14850442 (-) False LOC110529452
XM_036984834.1 mRNA downstream 33920 14755991 ~ 14850442 (-) False LOC110529452
XM_021611625.2 mRNA downstream 33920 14755995 ~ 14850442 (-) False LOC110529452
XM_036984836.1 mRNA downstream 33920 14755995 ~ 14850442 (-) False LOC110529452
XM_021611631.2 mRNA upstream 1332 14888797 ~ 14901607 (-) True LOC110529455
XM_036984842.1 mRNA upstream 21410 14908875 ~ 14965313 (-) False LOC110529190
XM_036984843.1 mRNA upstream 21410 14908875 ~ 14965313 (-) False LOC110529190
XM_036984844.1 mRNA upstream 21410 14908875 ~ 14965313 (-) True LOC110529190
XM_021611632.2 mRNA upstream 84149 14971614 ~ 14980854 (-) True LOC110529456
TU770677 other downstream 367834 14511590 ~ 14516528 (-) True G676635
TU770156 other downstream 596017 14287849 ~ 14288345 (-) True G676178
TU770045 other downstream 676737 14206987 ~ 14207625 (-) True G676077
TU769793 other downstream 898254 13983626 ~ 13986108 (-) False G675834
TU773511 other upstream 1545156 16432621 ~ 16433014 (-) True G679087
TU773640 other upstream 1737625 16625090 ~ 16630259 (-) False G679210
TU773642 other upstream 1737625 16625090 ~ 16630259 (-) True G679210
TU773944 other upstream 2226078 17113543 ~ 17114528 (-) True G679471
TU776244 other upstream 3903765 18791230 ~ 18792137 (-) True G681659

Expression Profile