RNA id: TU771883


Basic Information

Item Value
RNA id TU771883
length 2172
lncRNA type antisense_over
GC content 0.36
exon number 2
gene id G677648
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 15629598 ~ 15684714 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTGTTGTGAATGTGTTAAATCATATCCCTGAAAAACAATCCATTTCCAAATCCTATATTAAGCTGCAGTGAAATCATGATTGACACGAGAGCACATTTTCAGTAGTTTTATTGAAAAATGCCTCTTCTGTTTCAGAAATAAATAAGAAAATAAGGCTGTGGAATTCACAATTTGAAGTTAAAACATGAAGCAGCAATACCATATTCATAGTCTTGCACACAAATTCCAACTGCATTCGATATTAATAAAACAACAATGATAACAACTATATTCTGATTAAAAAACATACTAAATATACACCACAGACATGCAACCTTTGGTAAAATCAGCTGTGATTTGATATAAGAAAACTGATAAACATTTAGTCTAAAGATACAAAATGGAAGCCATGTTAAACTGCAGTACTGAAGATGAAAACTTTAGGTAGATGGTGAACAGATGGCCATCTTTCAAGTGAAAAACAGAGCAAAAGTATAAAATAGGAATAAGACATAATTTGATAATCAGACATTTTGAATGAACCGTGATTGGAAAGAGAAGTGTTTTTCATTGGATGCTCAACACTGTGTGAACAAACATTTGCATTGTCCAACACTGCAATTCGATGAACACTTAATGCAGATATGTTACAAGCAAAAGATACAATAGGAAAAAACAGCAAGCTCACAGATTGTCATGGAAAAATGTATaggattttgtttttgtttctgaATTCACATATGATTTAAGGTACTTCCAAAAATAGATGAGGTATCAAACCTCTTTTTAGTGAAATGTGCATAGCCCTTAATGACACCATATgtgaacaaaacaaaaacaaacacaagAAGAACAAAAAATAACCTATTTTATGACGCTATCCTTTTGGATTCCTTTCTTGATAGTGACCTCTCTCAACGCTCGTTTTGTGAGTCATCTTCTTCTTCAGGTGTTGGGACTACGTAGGTTTCAGGCTCAGGTGAATATGGCTCTGGTTGGAAATAGTGTTTTATGCCGATTGAACATGAGTGTAATTTGCAGAGTATGTCTCAACATGCACAAACTGttgtgttacagtatgttttattTTCAGGCTTGGACATGCAGTATACTGGTGAAATGACACAATTGAGTGGGCGTGGCCATATTCAGATAGGTTGTGATTTTGAAGGGCACTGATAGAAAGGGTTTGTAAACAATTCAGTGCATTTTCTAAATCTGTGTGATGTTAGCATTTCAATGTTAGTCCAGCTTGAGTGGTTGTGGGTGGGTTCAGTCATTTAACAGAATCATCATTGCCATTTTCTGCAGCTCATTCATTTACAAAATATCAAAAATCAAGTCATTCTAGCACCAGCCTAATCATACATTTTGTGATGTTATTCCTCATAACATAACAGAGGTAATCAGCTGGTAGTGGTAGAATATCCATTAATACTACAGCAAAATAAAGAAATGAGAACCAGAGAATGTATGAATGACGATTCTTAGAATGTGTAcgtagagagaaacactacctcCAGGAGAACATGGTAGAATATGAGCCTGAgcagtcggtgtgtgtgtgtgtgtaggctacagaAACATCACTTGTGGGGACGTGGTACAATATGAGCCTGAgcagtcggtgtgtgtgtgtgtaggctacagaAACATCACTTGTGGGGACATAGAAAAAGAGGCATTCATGTTGGCATTCAGCAAGCAGCAGGTTACAAGGCAAAAGTGTAACTACAGGTGTTAAAACTACATTTTGTGGATGTGATTCAAACATCATTTAGTTTATTTACAGATAACACCTCAAGAGTAACAATATTAATATTGTTGAAGTTGTTGATTCTCTCTGTTACAAAATACAACCTGGttagtgtttttgtttgtttttgtttgtttgtttgtttgtttgtttgtttgtgtatggtCCTCCACCCGATAGGTTTCTCTGTTCGTTCTTTGGCTTCAAGATGCAAACAGACCACTACGTTGTTGCCATCACCGATGCTTGTTTGTTCTAGTTGCTCTACAATGTTGTTAGTACCAGTCCACGTTGTTGTTCTTGTCTTTCTCAACATAGTTTGTTAATGTTATCCTTTGGTGGTTATCCTCAAACAGCTCTAGAGCGCGTGAGCAAGTATCTCAGTAAGAGGAATTTTTTTCAGGAATTCAAAGTGAAAGCAGCACAGGCGATTTAG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU771766 lncRNA upstream 93632 15588355 ~ 15588848 (+) True G677539
TU771711 lncRNA upstream 98214 15503599 ~ 15584266 (+) True G677488
TU771707 lncRNA upstream 182272 15499982 ~ 15500208 (+) True G677485
TU771705 lncRNA upstream 187011 15495229 ~ 15495469 (+) True G677483
TU771512 lncRNA upstream 334971 15347278 ~ 15347509 (+) True G677297
TU772634 lncRNA downstream 469836 16154550 ~ 16154784 (+) True G678305
TU772638 lncRNA downstream 471590 16156304 ~ 16156673 (+) True G678309
TU772661 lncRNA downstream 480484 16165198 ~ 16165428 (+) True G678332
TU772662 lncRNA downstream 481192 16165906 ~ 16166126 (+) True G678333
TU772655 lncRNA downstream 536638 16221352 ~ 16280431 (+) True G678326
XM_021611651.2 mRNA upstream 198859 15476954 ~ 15483621 (+) True crnkl1
NM_001124224.1 mRNA upstream 405549 15274628 ~ 15276931 (+) True nkx2.1b
XM_021611645.2 mRNA upstream 422149 15258311 ~ 15260331 (+) False LOC110529464
XM_021611642.2 mRNA upstream 544295 15135212 ~ 15138185 (+) True LOC110529462
XR_002474386.2 mRNA upstream 558430 15119106 ~ 15124050 (+) True LOC110529460
XM_021611657.2 mRNA downstream 169908 15854622 ~ 15888522 (+) False LOC110529475
XM_021611658.2 mRNA downstream 169909 15854623 ~ 15888522 (+) False LOC110529475
XM_036984867.1 mRNA downstream 169909 15854623 ~ 15888522 (+) False LOC110529475
XM_036984866.1 mRNA downstream 170451 15855165 ~ 15888522 (+) True LOC110529475
XM_036984869.1 mRNA downstream 207862 15892576 ~ 16023051 (+) False LOC110529476
TU771192 other upstream 422490 15258479 ~ 15259990 (+) True LOC110529464
TU771032 other upstream 575337 15105603 ~ 15107143 (+) False G676919
TU770444 other upstream 923556 14755998 ~ 14758924 (+) True LOC110529454
TU770214 other upstream 1319509 14360577 ~ 14362971 (+) True G676226
TU769658 other upstream 1826198 13855660 ~ 13856282 (+) True G675705
TU772775 other downstream 700088 16384802 ~ 16385945 (+) True G678417
TU772798 other downstream 702736 16387450 ~ 16388077 (+) False LOC110529493
TU772802 other downstream 702736 16387450 ~ 16388236 (+) False LOC110529493
TU772807 other downstream 702736 16387450 ~ 16388336 (+) True LOC110529493
TU773135 other downstream 1208445 16893159 ~ 16894835 (+) True LOC110529505

Expression Profile