RNA id: TU773784


Basic Information

Item Value
RNA id TU773784
length 2009
lncRNA type intronic
GC content 0.41
exon number 2
gene id G679332
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 16818931 ~ 16821129 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgagaaaaaatccaaccaggaagttggaaatctgaggtttgtagtttttcaactcagcccccattgaagatacagggtgatattagttatgtttcacttcccaaggcttccactagatgtcaaaatctgttttgaggattctactctaaaggaggggctcatgagggctctttgagtgagtggtctggcagcgcgctcacgtgaaaggtagctactttccacttcatttgtacagacaaaggaattgtccggttgtaACATTAaggaagttttatgttaaaaatatcctaaagatttattccatacttagtttggcatgtttctacgggctgtaacagaactttttgaacttttcgtccgacgttcttcgcgacctgaacgcgcttttggatttgtttaccaaacgccatAACAAAAGAAtatatttggacataactgatggacattatcgaacaaatcaaacattcatggtggaactgggattcctgggagtgcattctgatgaagatcatcaaaggtaagtgaatatttaaatcaatgtttattattagtatttctgtaaattgatgcacaatcaccgcatgttttagaacatataaatatgaactttatcaaacaaaacatacatgtattgtgtaacatgaagtcctatgagtatcatctgatgaagatcatcaaaggttagtgattaatttatctcaatttctgctttttgtgactcctctctttggctggaaaaatggctgtgtttttctgtggcttggtggtgtaAATACTTTATGAAATCAGAcactggctggattaacgagaatttgatctttaaaatggtgtaaaatacttgtatgcttaattatgagatttttgttgttttgaatttggcgccctgcactttcactggctgttgcgggGGGGTTCcgccagtcctagacaggttaaccaggtaggccagttgagaacaaattctcattcacaactgcgacctggtcaagataaagcaacaaaaacagcaacacagttacacataaacaaacgtacagtcaatagcacaatagaaaaagctatgtacattgtgtgcaaatgtagaagagtggtgaggtaggcaataaataggccattaacactggagtgatagatgtgcagatgatgatgtgcaagtagggtgcaaaagagcaagagggtaagtaataatatggttGGCTGTGTtcaggtacagtgattggtaagctgctctgacagctgatgcttaaagttagagagggagatataaaactccagcttcagtgatttttacaattcgttccagtcattggcagcagagaactggaaggaaaggcggccaaaggaagtgttggctttggggatgaccagtgaaatatacctgctggagcgcgtgctacgggtgggtgttgctatggtgaccagtgagctgagataaggcggggctttacctagcaaagacttatagatgacctggagccagtgggtttggcgatgaatatgtagtgtgggccagccaacaagagcatacaggtcgcagtggtggttattatatggggctttggtgacaaaacagatggcacagttttctgagtagagtgttgggggctattttgtaaattacatcgccgaggtcaaggatcggtaggatagtcagttttacgactATCCTAGCTAATTACAATGGATCAAATTCAAATGATGTCACGGCTTCCGCCGAAGttagtccctctccttgttcgggcggcattcgaAGTCACCgactttctagccatcgctgatcctcttttcattttcctttggttttgtcttgtcttgtatcacacctggttccaatgccatcaattacatgttgtgtatttaaccctctgttccccctcatgtccttgttggTGATTGTTTGTTAGTAAGCAATGTGCAAGATatgttctggtgtgcgacgggttttgtacttGTACCCACTCACAGCACTTGTACCCACttatattattttgtatattttggtttccGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU773536 lncRNA downstream 350630 16468003 ~ 16468301 (-) True LOC118965497
TU773535 lncRNA downstream 350982 16467628 ~ 16467949 (-) False LOC118965497
TU773531 lncRNA downstream 355879 16462828 ~ 16463052 (-) True G679107
TU773529 lncRNA downstream 356777 16461922 ~ 16462154 (-) True G679105
TU773528 lncRNA downstream 357066 16461484 ~ 16461865 (-) True G679104
TU773782 lncRNA upstream 4668 16825797 ~ 16830613 (-) True LOC110529503
TU773823 lncRNA upstream 81124 16902253 ~ 16910145 (-) True G679364
TU773796 lncRNA upstream 104783 16925912 ~ 16927054 (-) False LOC110529508
TU773797 lncRNA upstream 143358 16964487 ~ 17037933 (-) True LOC110529508
TU773879 lncRNA upstream 232847 17053976 ~ 17100186 (-) True G679407
XM_021611737.2 mRNA downstream 60814 16721162 ~ 16758117 (-) True LOC110529501
XM_021611739.2 mRNA downstream 60815 16721162 ~ 16758116 (-) False LOC110529501
XM_021611740.2 mRNA downstream 60815 16721162 ~ 16758116 (-) False LOC110529501
XM_021611736.2 mRNA downstream 98240 16685761 ~ 16720691 (-) True LOC110529499
XM_021611735.2 mRNA downstream 144787 16639846 ~ 16674144 (-) True LOC110529498
XR_002474399.2 mRNA upstream 4890 16826019 ~ 16830629 (-) False LOC110529503
XM_036984898.1 mRNA upstream 9622 16830751 ~ 16893020 (-) False LOC110529504
XM_036984899.1 mRNA upstream 9622 16830751 ~ 16893020 (-) True LOC110529504
XM_021611751.2 mRNA upstream 104768 16925897 ~ 17037936 (-) False LOC110529508
XM_021611752.2 mRNA upstream 234986 17056115 ~ 17081578 (-) False LOC110529509
TU773640 other downstream 188672 16625090 ~ 16630259 (-) False G679210
TU773642 other downstream 188672 16625090 ~ 16630259 (-) True G679210
TU773511 other downstream 385917 16432621 ~ 16433014 (-) True G679087
TU770677 other downstream 2302403 14511590 ~ 14516528 (-) True G676635
TU770156 other downstream 2530586 14287849 ~ 14288345 (-) True G676178
TU773944 other upstream 292414 17113543 ~ 17114528 (-) True G679471
TU776244 other upstream 1970101 18791230 ~ 18792137 (-) True G681659
TU779858 other upstream 4657637 21478766 ~ 21479203 (-) True G684844
TU780899 other upstream 5099298 21920427 ~ 21924908 (-) False LOC110529207
TU780900 other upstream 5099298 21920427 ~ 21924908 (-) True LOC110529207

Expression Profile