RNA id: TU773823



Basic Information


Item Value
RNA id TU773823
length 487
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G679364
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 16902253 ~ 16910145 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ctgaaatgtggcaaaaggtcgcaaagttaaagggggccgaatactttcgcaaggcactgtacctattgttcacctaataccttttctgcactattggttagagcctgtaagcaagcatttcactgtaaagtctacaacCGTTGTATTCGGCACAAGTGAAAAATAAACTTGATTTGATGGACTGTCACTTCTATtggattatttgagctgttcttgccataatatggacttggtcttcacACAAATAGGGCTggctaccttctgtataccaccaggACCATGTCACAACACACCGGATTGGCTCAAATTGCATTAAGaaggtaaaaataaagaaaaaaccgttgaataagtaggtgtgtccaatttttttactggtactgtttgtcatgtacagttgaagtcggaagtttacatacaccttagccaaaaacatttaaactgaGTTTTTCACAAATTCCtagcatttaatcctagtaaacattccccg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU773782 lncRNA downstream 71640 16825797 ~ 16830613 (-) True LOC110529503
TU773784 lncRNA downstream 81124 16818931 ~ 16821129 (-) True G679332
TU773536 lncRNA downstream 433952 16468003 ~ 16468301 (-) True LOC118965497
TU773535 lncRNA downstream 434304 16467628 ~ 16467949 (-) False LOC118965497
TU773531 lncRNA downstream 439201 16462828 ~ 16463052 (-) True G679107
TU773796 lncRNA upstream 15767 16925912 ~ 16927054 (-) False LOC110529508
TU773797 lncRNA upstream 54342 16964487 ~ 17037933 (-) True LOC110529508
TU773879 lncRNA upstream 143831 17053976 ~ 17100186 (-) True G679407
TU773936 lncRNA upstream 190286 17100431 ~ 17101124 (-) True G679463
TU773958 lncRNA upstream 218886 17129031 ~ 17129256 (-) True G679485
XM_036984898.1 mRNA downstream 9233 16830751 ~ 16893020 (-) False LOC110529504
XM_036984899.1 mRNA downstream 9233 16830751 ~ 16893020 (-) True LOC110529504
XR_002474399.2 mRNA downstream 71624 16826019 ~ 16830629 (-) False LOC110529503
XM_021611737.2 mRNA downstream 144136 16721162 ~ 16758117 (-) True LOC110529501
XM_021611739.2 mRNA downstream 144137 16721162 ~ 16758116 (-) False LOC110529501
XM_021611751.2 mRNA upstream 15752 16925897 ~ 17037936 (-) False LOC110529508
XM_021611752.2 mRNA upstream 145970 17056115 ~ 17081578 (-) False LOC110529509
XM_036984900.1 mRNA upstream 145970 17056115 ~ 17081579 (-) False LOC110529509
XM_036984901.1 mRNA upstream 145970 17056115 ~ 17081579 (-) True LOC110529509
XM_036984903.1 mRNA upstream 512621 17422766 ~ 17498984 (-) False LOC110529510
TU773640 other downstream 271994 16625090 ~ 16630259 (-) False G679210
TU773642 other downstream 271994 16625090 ~ 16630259 (-) True G679210
TU773511 other downstream 469239 16432621 ~ 16433014 (-) True G679087
TU770677 other downstream 2385725 14511590 ~ 14516528 (-) True G676635
TU770156 other downstream 2613908 14287849 ~ 14288345 (-) True G676178
TU773944 other upstream 203398 17113543 ~ 17114528 (-) True G679471
TU776244 other upstream 1881085 18791230 ~ 18792137 (-) True G681659
TU779858 other upstream 4568621 21478766 ~ 21479203 (-) True G684844
TU780899 other upstream 5010282 21920427 ~ 21924908 (-) False LOC110529207
TU780900 other upstream 5010282 21920427 ~ 21924908 (-) True LOC110529207

Expression Profile