RNA id: TU773936


Basic Information

Item Value
RNA id TU773936
length 694
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G679463
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 17100431 ~ 17101124 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attcagaccctttactcagtactttgttgaagcacatagGGAGTTTCctccattcttccctgcagatcctctcaagctctttcaggttggatggggagcgttgctgcacagctattatcaATTCTATCCAGAGATATTCGagcaggttcaagtccgggctctgactaggccactcaaggacattcagagacttggcccgaagccactcctgcgttgtcttggctgtgtgcttagggtcgttgtcctgttggaaggtgaaccttagccccaatctgaggtcctgagcgctctggagcaggttttcattaaggacctctctgtactttcctccgttcatctttccctcaatcttgaATCCCTCAATCTtgatctcccagtccctgctgctgaaaaacatccccacagcatgatgctgccaccaccatgcttcaccttagggatggtgccaggtctcctccagacatgatgcttggcattcaggccaaagagttcaatcttggtttcatcagaccagagaatcttgtttctcatggtctgagagtctttaggtgccttttggcaaactctaagcgggctgttatgtgccttttactgaggagtagcttctgtctggccactctaccataaaggcctgattggtggagtgctgcaaagatggttgtccttctggaaggttctcccatctccatagagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU773879 lncRNA downstream 245 17053976 ~ 17100186 (-) True G679407
TU773797 lncRNA downstream 62498 16964487 ~ 17037933 (-) True LOC110529508
TU773796 lncRNA downstream 173377 16925912 ~ 16927054 (-) False LOC110529508
TU773823 lncRNA downstream 190286 16902253 ~ 16910145 (-) True G679364
TU773782 lncRNA downstream 269818 16825797 ~ 16830613 (-) True LOC110529503
TU773958 lncRNA upstream 27907 17129031 ~ 17129256 (-) True G679485
TU774106 lncRNA upstream 100130 17201254 ~ 17251247 (-) True G679623
TU774125 lncRNA upstream 121657 17222781 ~ 17227113 (-) True G679642
TU774162 lncRNA upstream 178020 17279144 ~ 17279354 (-) True G679679
TU774164 lncRNA upstream 178589 17279713 ~ 17279943 (-) True G679681
XM_036984900.1 mRNA downstream 18852 17056115 ~ 17081579 (-) False LOC110529509
XM_036984901.1 mRNA downstream 18852 17056115 ~ 17081579 (-) True LOC110529509
XM_021611752.2 mRNA downstream 18853 17056115 ~ 17081578 (-) False LOC110529509
XM_021611751.2 mRNA downstream 62495 16925897 ~ 17037936 (-) False LOC110529508
XM_036984898.1 mRNA downstream 207411 16830751 ~ 16893020 (-) False LOC110529504
XM_036984903.1 mRNA upstream 321642 17422766 ~ 17498984 (-) False LOC110529510
XM_036984904.1 mRNA upstream 321642 17422766 ~ 17498984 (-) False LOC110529510
XM_036984905.1 mRNA upstream 321642 17422766 ~ 17498984 (-) False LOC110529510
XM_036984906.1 mRNA upstream 321642 17422766 ~ 17498984 (-) False LOC110529510
XM_036984907.1 mRNA upstream 321642 17422766 ~ 17498984 (-) False LOC110529510
TU773640 other downstream 470172 16625090 ~ 16630259 (-) False G679210
TU773642 other downstream 470172 16625090 ~ 16630259 (-) True G679210
TU773511 other downstream 667417 16432621 ~ 16433014 (-) True G679087
TU770677 other downstream 2583903 14511590 ~ 14516528 (-) True G676635
TU770156 other downstream 2812086 14287849 ~ 14288345 (-) True G676178
TU773944 other upstream 12419 17113543 ~ 17114528 (-) True G679471
TU776244 other upstream 1690106 18791230 ~ 18792137 (-) True G681659
TU779858 other upstream 4377642 21478766 ~ 21479203 (-) True G684844
TU780899 other upstream 4819303 21920427 ~ 21924908 (-) False LOC110529207
TU780900 other upstream 4819303 21920427 ~ 21924908 (-) True LOC110529207

Expression Profile