RNA id: TU774164



Basic Information


Item Value
RNA id TU774164
length 231
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G679681
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 17279713 ~ 17279943 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cacggtaTAGTTATGGGTTACTAACACAATGCAATgaaaggtccctagtggactaaaccgATATGATGGCTTGTTACACAAAATGGTGTAttcaaaagagagggaaagggagagacaaaGTAATTCAACTATAGTACATACAGCTGATAACTATGCTCATGGAAATGtgaatactttgcacatgaacggccgcTCAAACGAAGGAATTGCAATGTACATATTTACATGTTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU774162 lncRNA downstream 359 17279144 ~ 17279354 (-) True G679679
TU774106 lncRNA downstream 28466 17201254 ~ 17251247 (-) True G679623
TU774125 lncRNA downstream 52600 17222781 ~ 17227113 (-) True G679642
TU773958 lncRNA downstream 150457 17129031 ~ 17129256 (-) True G679485
TU773936 lncRNA downstream 178589 17100431 ~ 17101124 (-) True G679463
TU774186 lncRNA upstream 22645 17302588 ~ 17302936 (-) True G679703
TU774506 lncRNA upstream 229223 17509166 ~ 17509434 (-) True G680015
TU774539 lncRNA upstream 249747 17529690 ~ 17529939 (-) True G680046
TU774615 lncRNA upstream 304107 17584050 ~ 17584354 (-) True G680121
TU774617 lncRNA upstream 305267 17585210 ~ 17585501 (-) True G680123
XM_036984900.1 mRNA downstream 198134 17056115 ~ 17081579 (-) False LOC110529509
XM_036984901.1 mRNA downstream 198134 17056115 ~ 17081579 (-) True LOC110529509
XM_021611752.2 mRNA downstream 198135 17056115 ~ 17081578 (-) False LOC110529509
XM_021611751.2 mRNA downstream 241777 16925897 ~ 17037936 (-) False LOC110529508
XM_036984899.1 mRNA downstream 386693 16830751 ~ 16893020 (-) True LOC110529504
XM_036984903.1 mRNA upstream 142823 17422766 ~ 17498984 (-) False LOC110529510
XM_036984904.1 mRNA upstream 142823 17422766 ~ 17498984 (-) False LOC110529510
XM_036984905.1 mRNA upstream 142823 17422766 ~ 17498984 (-) False LOC110529510
XM_036984906.1 mRNA upstream 142823 17422766 ~ 17498984 (-) False LOC110529510
XM_036984907.1 mRNA upstream 142823 17422766 ~ 17498984 (-) False LOC110529510
TU773944 other downstream 165185 17113543 ~ 17114528 (-) True G679471
TU773640 other downstream 649454 16625090 ~ 16630259 (-) False G679210
TU773642 other downstream 649454 16625090 ~ 16630259 (-) True G679210
TU773511 other downstream 846699 16432621 ~ 16433014 (-) True G679087
TU770677 other downstream 2763185 14511590 ~ 14516528 (-) True G676635
TU776244 other upstream 1511287 18791230 ~ 18792137 (-) True G681659
TU779858 other upstream 4198823 21478766 ~ 21479203 (-) True G684844
TU780899 other upstream 4640484 21920427 ~ 21924908 (-) False LOC110529207
TU780900 other upstream 4640484 21920427 ~ 21924908 (-) True LOC110529207
TU781111 other upstream 4879087 22159030 ~ 22161042 (-) False G685953

Expression Profile