RNA id: TU775094


Basic Information

Item Value
RNA id TU775094
length 620
lncRNA type intronic
GC content 0.36
exon number 2
gene id G680581
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 17710544 ~ 17715714 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAATAGGTATGATGTGCCACCCATGTTTCTAGGAAAGTataccaaatatttaggaagaggtcatcatttcatggagtctgaaggaataaaccacatggaaaaagtggtaagcaagtttggtccaaaaaacagattttcaccaagtcaaatgaatttgttgtgttagaggtttcatgatgcttttatctaaaccaaagtagatcatttAAATATTGTTCTATACATAATTTGGGGTCTATATAAGCTACAATATGAGAATCTAAAcatagcatgaaagtgcatccttgtagctgtgtgggctaatatagtcaaaatgttttcctttggacagttgagccaatggccatggggtaagttgagggTATGGCAAGTTGACCAAAtgtaagtgttttcttcccaggtgtAATGCAAGGCATTAATCGCAGGAATATGacgtcaaatcaaattttatttgtcacatgcgccaaatacaacaggtgtaccttatagtgaaatgcttacttgcaagcccttaaacaacaatgaagtttgaagaaaatacctaaaaaaaggtaggggaaTAATAACAAATTACTAAAGAGCAGCagttaaataacaatagcggggctatatacagggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU775084 lncRNA downstream 7299 17703015 ~ 17703245 (-) True G680572
TU775083 lncRNA downstream 8289 17701814 ~ 17702255 (-) True G680571
TU775085 lncRNA downstream 11364 17698793 ~ 17699180 (-) True G680573
TU774617 lncRNA downstream 125043 17585210 ~ 17585501 (-) True G680123
TU774615 lncRNA downstream 126190 17584050 ~ 17584354 (-) True G680121
TU775100 lncRNA upstream 15869 17731583 ~ 17731795 (-) True G680586
TU775106 lncRNA upstream 29611 17745325 ~ 17745528 (-) True G680592
TU775172 lncRNA upstream 120126 17835840 ~ 17836420 (-) True G680654
TU775382 lncRNA upstream 430634 18146348 ~ 18146565 (-) True G680859
TU775407 lncRNA upstream 451535 18167249 ~ 18167464 (-) True G680882
XM_036984907.1 mRNA downstream 211560 17422766 ~ 17498984 (-) False LOC110529510
XM_021611757.2 mRNA upstream 5253 17720967 ~ 17723873 (-) True LOC110529513
XM_021611758.2 mRNA upstream 12576 17728290 ~ 17756041 (-) True LOC110529514
XM_021611761.2 mRNA upstream 40539 17756253 ~ 17835551 (-) True LOC110529517
XM_021611765.2 mRNA upstream 353438 18069152 ~ 18072594 (-) True LOC110529520
XM_021611774.2 mRNA upstream 866449 18582163 ~ 18587994 (-) False LOC110529526
TU773944 other downstream 596016 17113543 ~ 17114528 (-) True G679471
TU773640 other downstream 1080285 16625090 ~ 16630259 (-) False G679210
TU773642 other downstream 1080285 16625090 ~ 16630259 (-) True G679210
TU773511 other downstream 1277530 16432621 ~ 16433014 (-) True G679087
TU770677 other downstream 3194016 14511590 ~ 14516528 (-) True G676635
TU776244 other upstream 1075516 18791230 ~ 18792137 (-) True G681659
TU779858 other upstream 3763052 21478766 ~ 21479203 (-) True G684844
TU780899 other upstream 4204713 21920427 ~ 21924908 (-) False LOC110529207
TU780900 other upstream 4204713 21920427 ~ 21924908 (-) True LOC110529207
TU781111 other upstream 4443316 22159030 ~ 22161042 (-) False G685953

Expression Profile