RNA id: TU775172



Basic Information


Item Value
RNA id TU775172
length 581
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G680654
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 17835840 ~ 17836420 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CACGGTGGAGCCTGGATTACTACATGTTTCCCGGCAATGGAGCCAAGACAGTTGTGGAAATTCCACCTCTCCAGGAACTCGGCAACAATGGCCCTCCAGTCTTCCTCCTTGGTGACAGGCATGTATTCACCTACAAGACAGTCCCAAATGGTTTGTGCCACAGAGGGGACAATGCCTGCCACCGTGGACCATCCAACTCCAAAGCTGAATCTGATGGTCCTGTAGGAGTCCCCTGTCGccaagaatctgaaatataattcAAAAGAATTTTCAATATTGTCTAACTTAATATTCCACCCACACATTCTATCTACTTATATACCTACCTCATTACAGTTTATGCTCTACTAATTATATTGTAATACTCATCAACCATCATTAACAATGCCTTGAAACAGTACAAATCAGTCTATGACTGTATCAATAAACTGTAGCCCAGGCCAACTCTACTTGTAGATAAAAAGGTGctgtctagaacctaaaagggttatcaggctgtccccataggagaaccctttttggttccaagtagaaccctatTCGGTTCCATGTATAACTTTTTCCTCTATTATAACAGATCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU775106 lncRNA downstream 90312 17745325 ~ 17745528 (-) True G680592
TU775100 lncRNA downstream 104045 17731583 ~ 17731795 (-) True G680586
TU775095 lncRNA downstream 118289 17712733 ~ 17717551 (-) True G680582
TU775094 lncRNA downstream 120126 17710544 ~ 17715714 (-) True G680581
TU775084 lncRNA downstream 132595 17703015 ~ 17703245 (-) True G680572
TU775382 lncRNA upstream 309928 18146348 ~ 18146565 (-) True G680859
TU775407 lncRNA upstream 330829 18167249 ~ 18167464 (-) True G680882
TU775409 lncRNA upstream 332329 18168749 ~ 18169039 (-) True G680884
TU775417 lncRNA upstream 342083 18178503 ~ 18178731 (-) True G680892
TU775425 lncRNA upstream 347286 18183706 ~ 18183941 (-) True G680900
XM_021611761.2 mRNA downstream 289 17756253 ~ 17835551 (-) True LOC110529517
XM_021611758.2 mRNA downstream 79799 17728290 ~ 17756041 (-) True LOC110529514
XM_021611757.2 mRNA downstream 111967 17720967 ~ 17723873 (-) True LOC110529513
XM_021611756.2 mRNA downstream 115645 17706609 ~ 17720195 (-) True LOC110529512
XM_036984909.1 mRNA downstream 336856 17422766 ~ 17498984 (-) False LOC110529510
XM_021611765.2 mRNA upstream 232732 18069152 ~ 18072594 (-) True LOC110529520
XM_021611774.2 mRNA upstream 745743 18582163 ~ 18587994 (-) False LOC110529526
XM_021611776.2 mRNA upstream 745743 18582163 ~ 18587994 (-) False LOC110529526
XM_021611775.2 mRNA upstream 746484 18582904 ~ 18587994 (-) True LOC110529526
XM_036984921.1 mRNA upstream 752398 18588818 ~ 18674196 (-) False LOC110529198
TU773944 other downstream 721312 17113543 ~ 17114528 (-) True G679471
TU773640 other downstream 1205581 16625090 ~ 16630259 (-) False G679210
TU773642 other downstream 1205581 16625090 ~ 16630259 (-) True G679210
TU773511 other downstream 1402826 16432621 ~ 16433014 (-) True G679087
TU770677 other downstream 3319312 14511590 ~ 14516528 (-) True G676635
TU776244 other upstream 954810 18791230 ~ 18792137 (-) True G681659
TU779858 other upstream 3642346 21478766 ~ 21479203 (-) True G684844
TU780899 other upstream 4084007 21920427 ~ 21924908 (-) False LOC110529207
TU780900 other upstream 4084007 21920427 ~ 21924908 (-) True LOC110529207
TU781111 other upstream 4322610 22159030 ~ 22161042 (-) False G685953

Expression Profile