RNA id: TU775588



Basic Information


Item Value
RNA id TU775588
length 822
lncRNA type antisense_over
GC content 0.52
exon number 6
gene id G681050
representative False

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 18295358 ~ 18298817 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGAATTTCTGCTCGTCTGTGGATGTCTGACTGGGTACGGTCAAGAACACTTTGCCATGTCTGCCCAACCTCTCCACTTTGATGAGGTTGAAGACTGGAGGCCATTGGCTGACAGGCTTTGAACCAAGTGGGATCTCGACATCTTCCTCTCCCAGGTTGTAGACGTACACCAGGTTGTCATTCTTGATTGCCAGACCCATGTAGTCCTTCCTACCGTTTCTGTCTCCCAGATAGAAGATGAAGCGGTCCTCGATAGGGTCCTTATCTGGGTCCACCCTGATGAACAGGCTGATGGTGGTCACTGTCTTCAGGTCCTCAAGGTTGGTGTGGGGCTGCACCTGAACTGATGACTGACCGTTGAACTTCATGGACACTTGGACCTTCTTGGCCACACTCCTGGCCTGGGCAATGAGCTCTCTGATCCTCATGATGTTAGTGGTCACATTGTTCACTTGGTTCTTCTCCTCCACCACACGCAGCTTATCCAGCAGTTCAGGGACCAGCTCAGACAGGTTCTCCACTGCTTCCCCAGCAGAGACTACAGCGTGGTCAAAGGCTGCAGCAGAGTAATCTTGGTTCTTCATGTTGGTGGCCCACTCCTCCACCTTCTCGTGGATGGGGGTGATGGTCTGCAGGACCTCCACTGACCGGTTCAGGGTGCCTTCAGCCACCTCCTCGGTGAGCTCCAGACGCTTGGTGGTTCTGCCTGGCTCAATTCCCTTGATATCTTTCAGTACTACCGCTAGTTTTTTGGTGTAATCCCCCATGGTCTCCTTGGTCTCCTCAATGTATTTCATCTTGTCCAGAACCTCAGCTTCAACCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU775442 lncRNA downstream 97794 18197358 ~ 18197564 (-) True G680917
TU775437 lncRNA downstream 103072 18192036 ~ 18192286 (-) True G680912
TU775425 lncRNA downstream 111417 18183706 ~ 18183941 (-) True G680900
TU775417 lncRNA downstream 116627 18178503 ~ 18178731 (-) True G680892
TU775409 lncRNA downstream 126319 18168749 ~ 18169039 (-) True G680884
TU775609 lncRNA upstream 19324 18318141 ~ 18318944 (-) False G681064
TU775607 lncRNA upstream 19348 18318165 ~ 18320361 (-) True G681064
TU775610 lncRNA upstream 24232 18323049 ~ 18323622 (-) True G681065
TU775617 lncRNA upstream 29667 18328484 ~ 18328779 (-) True G681072
TU775628 lncRNA upstream 38254 18337071 ~ 18337297 (-) True G681083
XM_021611765.2 mRNA downstream 222764 18069152 ~ 18072594 (-) True LOC110529520
XM_021611761.2 mRNA downstream 459807 17756253 ~ 17835551 (-) True LOC110529517
XM_021611758.2 mRNA downstream 539317 17728290 ~ 17756041 (-) True LOC110529514
XM_021611757.2 mRNA downstream 571485 17720967 ~ 17723873 (-) True LOC110529513
XM_021611756.2 mRNA downstream 575163 17706609 ~ 17720195 (-) True LOC110529512
XM_021611774.2 mRNA upstream 283346 18582163 ~ 18587994 (-) False LOC110529526
XM_021611776.2 mRNA upstream 283346 18582163 ~ 18587994 (-) False LOC110529526
XM_021611775.2 mRNA upstream 284087 18582904 ~ 18587994 (-) True LOC110529526
XM_036984921.1 mRNA upstream 290001 18588818 ~ 18674196 (-) False LOC110529198
XR_005052824.1 mRNA upstream 290001 18588818 ~ 18674196 (-) False LOC110529198
TU773944 other downstream 1180830 17113543 ~ 17114528 (-) True G679471
TU773640 other downstream 1665099 16625090 ~ 16630259 (-) False G679210
TU773642 other downstream 1665099 16625090 ~ 16630259 (-) True G679210
TU773511 other downstream 1862344 16432621 ~ 16433014 (-) True G679087
TU770677 other downstream 3778830 14511590 ~ 14516528 (-) True G676635
TU776244 other upstream 492413 18791230 ~ 18792137 (-) True G681659
TU779858 other upstream 3179949 21478766 ~ 21479203 (-) True G684844
TU780899 other upstream 3621610 21920427 ~ 21924908 (-) False LOC110529207
TU780900 other upstream 3621610 21920427 ~ 21924908 (-) True LOC110529207
TU781111 other upstream 3860213 22159030 ~ 22161042 (-) False G685953

Expression Profile