RNA id: TU775485


Basic Information

Item Value
RNA id TU775485
length 303
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G680957
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 18319047 ~ 18319349 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttgatgttattttaattgtttcctttcaaaaacaagaatatttctaagtgacaccaaacatttgaacggtagtgtatatatttttcaaatttgggagaacaaaacaaaacaggcaGACAATACATAACATGATACAACACAGACAGTAGACTAAAAacgaagaaaaataaataaataggtggTAAGGAAATGGCAGTCACTAGAAGGGGCTATATCAGCATGTAACAAAATAGTCTTCATTGCTTTGTCACCTTGTTGTTTTTCTACATTTGTTCTGCTGAATAAAATGGATTTTCTAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU775484 lncRNA upstream 104 18318163 ~ 18318943 (+) True G680956
TU775487 lncRNA upstream 9095 18309150 ~ 18309952 (+) True G680959
TU775445 lncRNA upstream 119228 18199531 ~ 18199819 (+) True G680920
TU775444 lncRNA upstream 120075 18198381 ~ 18198972 (+) True G680919
TU775424 lncRNA upstream 134976 18183848 ~ 18184071 (+) True G680899
TU775624 lncRNA downstream 14489 18333838 ~ 18334043 (+) True LOC110529194
TU775629 lncRNA downstream 19096 18338445 ~ 18347351 (+) True G681084
TU775704 lncRNA downstream 138412 18457761 ~ 18461807 (+) False G681151
TU775705 lncRNA downstream 138412 18457761 ~ 18464343 (+) True G681151
TU775721 lncRNA downstream 154420 18473769 ~ 18473996 (+) True G681167
XM_036986828.1 mRNA upstream 1447 18310907 ~ 18317600 (+) True LOC118965599
XR_002474400.2 mRNA upstream 7983 18274367 ~ 18311064 (+) False LOC110529521
XM_021611766.2 mRNA upstream 10440 18274367 ~ 18308607 (+) False LOC110529521
XM_036984915.1 mRNA upstream 10440 18283223 ~ 18308607 (+) True LOC110529521
XR_005053017.1 mRNA upstream 154191 18162705 ~ 18164856 (+) True LOC110531073
LOC110529194 mRNA downstream 12198 18331547 ~ 18342108 (+) False LOC110529194
XR_005052821.1 mRNA downstream 43439 18362788 ~ 18389361 (+) False LOC110529523
XR_005052822.1 mRNA downstream 43439 18362788 ~ 18389361 (+) False LOC110529523
XM_021611768.2 mRNA downstream 56444 18375793 ~ 18449484 (+) False LOC110529523
XM_036984916.1 mRNA downstream 56445 18375794 ~ 18449484 (+) False LOC110529523
TU773135 other upstream 1424212 16893159 ~ 16894835 (+) True LOC110529505
TU772807 other upstream 1930711 16387450 ~ 16388336 (+) True LOC110529493
TU772802 other upstream 1930811 16387450 ~ 16388236 (+) False LOC110529493
TU772798 other upstream 1930970 16387450 ~ 16388077 (+) False LOC110529493
TU772775 other upstream 1933102 16384802 ~ 16385945 (+) True G678417
TU776513 other downstream 844587 19163936 ~ 19165640 (+) True G681909
TU777286 other downstream 1409484 19728833 ~ 19729671 (+) True G682611
TU778522 other downstream 2243526 20562875 ~ 20563434 (+) True G683669
TU778611 other downstream 2307601 20626950 ~ 20632899 (+) True G683757
TU778731 other downstream 2387709 20707058 ~ 20707371 (+) True G683845

Expression Profile