RNA id: TU776076



Basic Information


Item Value
RNA id TU776076
length 273
lncRNA type intronic
GC content 0.44
exon number 2
gene id G681499
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 18477311 ~ 18480165 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tgtagctttaatttaataccctgcttgtgaattttgatcaaggtttgagttttaacgagtacatttagcatttagcgtagcgcatttgcatttccaggtgcctacttgggacatgtgcgtctcaagtagattcaagaagttaagaagcagtgcggctaggttgggttgtgtatcggaggacgcatgactttcaaccttcgtctcttccgagcccgtacgggagttgtagcgatgagacaagatagtagcttctacaacaattggataccacga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU776066 lncRNA downstream 11900 18465088 ~ 18465411 (-) True G681490
TU776065 lncRNA downstream 12352 18464673 ~ 18464959 (-) True G681489
TU776007 lncRNA downstream 105395 18371716 ~ 18371916 (-) True G681433
TU776006 lncRNA downstream 105602 18371510 ~ 18371709 (-) True G681432
TU776003 lncRNA downstream 109386 18367405 ~ 18367925 (-) True G681429
TU776080 lncRNA upstream 13840 18494005 ~ 18494239 (-) True G681503
TU776081 lncRNA upstream 14955 18495120 ~ 18495440 (-) True G681504
TU776084 lncRNA upstream 24834 18504999 ~ 18505266 (-) True G681507
TU776085 lncRNA upstream 27125 18507290 ~ 18507492 (-) True G681508
TU776094 lncRNA upstream 45883 18526048 ~ 18526273 (-) True G681517
XM_021611765.2 mRNA downstream 404717 18069152 ~ 18072594 (-) True LOC110529520
XM_021611761.2 mRNA downstream 641760 17756253 ~ 17835551 (-) True LOC110529517
XM_021611758.2 mRNA downstream 721270 17728290 ~ 17756041 (-) True LOC110529514
XM_021611757.2 mRNA downstream 753438 17720967 ~ 17723873 (-) True LOC110529513
XM_021611756.2 mRNA downstream 757116 17706609 ~ 17720195 (-) True LOC110529512
XM_021611774.2 mRNA upstream 101998 18582163 ~ 18587994 (-) False LOC110529526
XM_021611776.2 mRNA upstream 101998 18582163 ~ 18587994 (-) False LOC110529526
XM_021611775.2 mRNA upstream 102739 18582904 ~ 18587994 (-) True LOC110529526
XM_036984921.1 mRNA upstream 108653 18588818 ~ 18674196 (-) False LOC110529198
XR_005052824.1 mRNA upstream 108653 18588818 ~ 18674196 (-) False LOC110529198
TU773944 other downstream 1362783 17113543 ~ 17114528 (-) True G679471
TU773640 other downstream 1847052 16625090 ~ 16630259 (-) False G679210
TU773642 other downstream 1847052 16625090 ~ 16630259 (-) True G679210
TU773511 other downstream 2044297 16432621 ~ 16433014 (-) True G679087
TU770677 other downstream 3960783 14511590 ~ 14516528 (-) True G676635
TU776244 other upstream 311065 18791230 ~ 18792137 (-) True G681659
TU779858 other upstream 2998601 21478766 ~ 21479203 (-) True G684844
TU780899 other upstream 3440262 21920427 ~ 21924908 (-) False LOC110529207
TU780900 other upstream 3440262 21920427 ~ 21924908 (-) True LOC110529207
TU781111 other upstream 3678865 22159030 ~ 22161042 (-) False G685953

Expression Profile