RNA id: TU776084



Basic Information


Item Value
RNA id TU776084
length 268
lncRNA type intronic
GC content 0.49
exon number 1
gene id G681507
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 18504999 ~ 18505266 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCACTAAACATCAGTGTGGGCAAACAGCATCAACCAAGACAGAGCAGCTCTCCAGAGAGTACCCTGTAGATAACTGTAGCAAACACAGCATGTGAACTGATTTCAACACACAGGCATCAACAAACCCACCAGACTAGACGAAAATAACCCTTCACATCTACAGAGAGCAGCCCCATCTGACATCCAATCCCTTTCACAACCACAAAGAAACAGACAGCGCACACGGCACACAGAGGGCCTCTCTaaggactgacagactgacaggtaG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU776081 lncRNA downstream 9559 18495120 ~ 18495440 (-) True G681504
TU776080 lncRNA downstream 10760 18494005 ~ 18494239 (-) True G681503
TU776076 lncRNA downstream 24834 18477311 ~ 18480165 (-) True G681499
TU776066 lncRNA downstream 39588 18465088 ~ 18465411 (-) True G681490
TU776065 lncRNA downstream 40040 18464673 ~ 18464959 (-) True G681489
TU776085 lncRNA upstream 2024 18507290 ~ 18507492 (-) True G681508
TU776094 lncRNA upstream 20782 18526048 ~ 18526273 (-) True G681517
TU776103 lncRNA upstream 36924 18542190 ~ 18542648 (-) True G681525
TU776140 lncRNA upstream 83568 18588834 ~ 18589298 (-) True LOC110529198
TU776145 lncRNA upstream 87331 18592597 ~ 18592906 (-) True G681562
XM_021611765.2 mRNA downstream 432405 18069152 ~ 18072594 (-) True LOC110529520
XM_021611761.2 mRNA downstream 669448 17756253 ~ 17835551 (-) True LOC110529517
XM_021611758.2 mRNA downstream 748958 17728290 ~ 17756041 (-) True LOC110529514
XM_021611757.2 mRNA downstream 781126 17720967 ~ 17723873 (-) True LOC110529513
XM_021611756.2 mRNA downstream 784804 17706609 ~ 17720195 (-) True LOC110529512
XM_021611774.2 mRNA upstream 76897 18582163 ~ 18587994 (-) False LOC110529526
XM_021611776.2 mRNA upstream 76897 18582163 ~ 18587994 (-) False LOC110529526
XM_021611775.2 mRNA upstream 77638 18582904 ~ 18587994 (-) True LOC110529526
XM_036984921.1 mRNA upstream 83552 18588818 ~ 18674196 (-) False LOC110529198
XR_005052824.1 mRNA upstream 83552 18588818 ~ 18674196 (-) False LOC110529198
TU773944 other downstream 1390471 17113543 ~ 17114528 (-) True G679471
TU773640 other downstream 1874740 16625090 ~ 16630259 (-) False G679210
TU773642 other downstream 1874740 16625090 ~ 16630259 (-) True G679210
TU773511 other downstream 2071985 16432621 ~ 16433014 (-) True G679087
TU770677 other downstream 3988471 14511590 ~ 14516528 (-) True G676635
TU776244 other upstream 285964 18791230 ~ 18792137 (-) True G681659
TU779858 other upstream 2973500 21478766 ~ 21479203 (-) True G684844
TU780899 other upstream 3415161 21920427 ~ 21924908 (-) False LOC110529207
TU780900 other upstream 3415161 21920427 ~ 21924908 (-) True LOC110529207
TU781111 other upstream 3653764 22159030 ~ 22161042 (-) False G685953

Expression Profile