RNA id: TU776243


Basic Information

Item Value
RNA id TU776243
length 976
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G681658
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 18788065 ~ 18789040 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aactgtacgaTTGTATAATGTATGGGTTGTTCCACCATCTCGGTGCCATTTGAGAAGTGTAACTCCAAATTTTGGGGGGATTTcgcctaattttaacattctgtcatagagagcacatgttcaactttaTAAAAAATCTGTTTTCCCAACTCAAGAGGTTAAATTTAAAAACAAATTTACTATAGcaagtgcctattaagtgccaaataaagtgacACGGTTGACCGTAACATGGTTGACAATTTCATCTGAAATCAGCCATGAATCCCATCGTGACAGGCGGAATGGAATCATGTTGTGAGCATGTGGAGTGGCAATtaaatgcaagcttcacaaaaaaataagaaattgcTAAAACATTTCTAGTCTGTATATCTACGGCTAACAGGGTTGACTTTTATGCTCGACAGCTCAGTTTCCCAccacaaaacaacagaaaatggccaaaaagagtagaaccagctcacctgattttACACTaggatttgactattagatgttcaatgtttgtTTTGAGAAGGTAATAGTTTCACCACATTAAAAATAGAGTTGAGttcacataacagggttgaccttaaaatgagggataGACGTAAATGAAtaactaatcacatgaaataaataataatctacagaaatgactttgtcaaagcaacaaaataactagggctttacaatgatggtgaaacttGAAGAAATGTTGCGATTAAGTGGTTTGAAATCTTCCTATAAGTGACACAGGGTTAACTGAGGGACCTGTCAAAATACAGGATTTTCGCACATTAGCAAGCCTTTATTCATATAATAATCAGATTGGATTGAATTCtacatgtggtctatattaaggggcacttcatttaatatagcaggcttttaaaattcaaaattggtgcacaatttctacttaaaatatcccAGGGACGCAAAAGGCACTCGTGGAACAACCATATACCATCCATATAGTTTATATTTCTTT

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU776169 lncRNA downstream 158267 18626724 ~ 18629798 (-) True G681586
TU776145 lncRNA downstream 195159 18592597 ~ 18592906 (-) True G681562
TU776140 lncRNA downstream 198767 18588834 ~ 18589298 (-) True LOC110529198
TU776103 lncRNA downstream 245417 18542190 ~ 18542648 (-) True G681525
TU776094 lncRNA downstream 261792 18526048 ~ 18526273 (-) True G681517
TU776242 lncRNA upstream 6534 18795574 ~ 18796382 (-) True G681657
TU776257 lncRNA upstream 10187 18799227 ~ 18799495 (-) True G681672
TU776259 lncRNA upstream 12723 18801763 ~ 18801963 (-) True G681674
TU776260 lncRNA upstream 15927 18804967 ~ 18805260 (-) True G681675
TU776261 lncRNA upstream 16420 18805460 ~ 18805663 (-) True G681676
XM_021611778.2 mRNA downstream 73245 18690451 ~ 18714820 (-) True LOC110529528
XM_021611777.2 mRNA downstream 100400 18676608 ~ 18687665 (-) True LOC110529527
XM_036984921.1 mRNA downstream 113869 18588818 ~ 18674196 (-) False LOC110529198
XR_005052824.1 mRNA downstream 113869 18588818 ~ 18674196 (-) False LOC110529198
XM_021611774.2 mRNA downstream 200071 18582163 ~ 18587994 (-) False LOC110529526
XM_021611785.2 mRNA upstream 87694 18876734 ~ 18883214 (-) False LOC110529532
XM_036984924.1 mRNA upstream 87694 18876734 ~ 18883562 (-) True LOC110529532
LOC110529199 mRNA upstream 100056 18889096 ~ 18895190 (-) True LOC110529199
LOC110529535 mRNA upstream 117248 18906288 ~ 18913467 (-) False LOC110529535
XM_021611787.2 mRNA upstream 124670 18913710 ~ 18921786 (-) False LOC110529533
TU773944 other downstream 1673537 17113543 ~ 17114528 (-) True G679471
TU773640 other downstream 2157806 16625090 ~ 16630259 (-) False G679210
TU773642 other downstream 2157806 16625090 ~ 16630259 (-) True G679210
TU773511 other downstream 2355051 16432621 ~ 16433014 (-) True G679087
TU770677 other downstream 4271537 14511590 ~ 14516528 (-) True G676635
TU776244 other upstream 2190 18791230 ~ 18792137 (-) True G681659
TU779858 other upstream 2689726 21478766 ~ 21479203 (-) True G684844
TU780899 other upstream 3131387 21920427 ~ 21924908 (-) False LOC110529207
TU780900 other upstream 3131387 21920427 ~ 21924908 (-) True LOC110529207
TU781111 other upstream 3369990 22159030 ~ 22161042 (-) False G685953

Expression Profile