RNA id: TU776259



Basic Information


Item Value
RNA id TU776259
length 201
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G681674
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 18801763 ~ 18801963 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TATCACCAGACCACCAAAaattccatccctaactacaacattttcagacaagatagaacggccaaagggggcggtgttgcaatctactgcaaagatagcctgcagagttctgtcctactttccaggtctgtacccaaacaatttgaacttctacttttaaaaatccacctctctaaaaacaaatctctcaccattgccgcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU776257 lncRNA downstream 2268 18799227 ~ 18799495 (-) True G681672
TU776242 lncRNA downstream 5381 18795574 ~ 18796382 (-) True G681657
TU776243 lncRNA downstream 12723 18788065 ~ 18789040 (-) True G681658
TU776169 lncRNA downstream 171965 18626724 ~ 18629798 (-) True G681586
TU776145 lncRNA downstream 208857 18592597 ~ 18592906 (-) True G681562
TU776260 lncRNA upstream 3004 18804967 ~ 18805260 (-) True G681675
TU776261 lncRNA upstream 3497 18805460 ~ 18805663 (-) True G681676
TU776293 lncRNA upstream 34483 18836446 ~ 18838361 (-) True G681704
TU776331 lncRNA upstream 72106 18874069 ~ 18876496 (-) True G681737
TU776338 lncRNA upstream 86732 18888695 ~ 18888976 (-) True G681744
XM_021611778.2 mRNA downstream 86943 18690451 ~ 18714820 (-) True LOC110529528
XM_021611777.2 mRNA downstream 114098 18676608 ~ 18687665 (-) True LOC110529527
XM_036984921.1 mRNA downstream 127567 18588818 ~ 18674196 (-) False LOC110529198
XR_005052824.1 mRNA downstream 127567 18588818 ~ 18674196 (-) False LOC110529198
XM_021611775.2 mRNA downstream 213769 18582904 ~ 18587994 (-) True LOC110529526
XM_021611785.2 mRNA upstream 74771 18876734 ~ 18883214 (-) False LOC110529532
XM_036984924.1 mRNA upstream 74771 18876734 ~ 18883562 (-) True LOC110529532
LOC110529199 mRNA upstream 87133 18889096 ~ 18895190 (-) True LOC110529199
LOC110529535 mRNA upstream 104325 18906288 ~ 18913467 (-) False LOC110529535
XM_021611787.2 mRNA upstream 111747 18913710 ~ 18921786 (-) False LOC110529533
TU776244 other downstream 9626 18791230 ~ 18792137 (-) True G681659
TU773944 other downstream 1687235 17113543 ~ 17114528 (-) True G679471
TU773640 other downstream 2171504 16625090 ~ 16630259 (-) False G679210
TU773642 other downstream 2171504 16625090 ~ 16630259 (-) True G679210
TU773511 other downstream 2368749 16432621 ~ 16433014 (-) True G679087
TU779858 other upstream 2676803 21478766 ~ 21479203 (-) True G684844
TU780899 other upstream 3118464 21920427 ~ 21924908 (-) False LOC110529207
TU780900 other upstream 3118464 21920427 ~ 21924908 (-) True LOC110529207
TU781111 other upstream 3357067 22159030 ~ 22161042 (-) False G685953
TU783285 other upstream 4814944 23616907 ~ 23621246 (-) True LOC110529643

Expression Profile


TU776259 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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TU776259 Expression in each Bioproject

Bar chart with 20 bars.
TU776259 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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