RNA id: TU776293


Basic Information

Item Value
RNA id TU776293
length 1844
lncRNA type intronic
GC content 0.38
exon number 2
gene id G681704
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 18836446 ~ 18838361 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAATGCTGAGTTCACCTAGCAGCCACTTGGAAGTGGAAATGCTGTTGCATTCCATCAATGAATATGATAAATGGGTTAAACCTGCAGTTATCTTGATACAAGTGGTAATTGGGTTCTGGGCAGGGTAATCTATAACATTGTATAAACTACAATCTTGATCCCTATGATAAATAAACCCGGTCAAGAAAACAATACTATATCAGAGCATAATTATGTTAAGATTTATTATGACAAGACATTGTTGGAAAAATAGAAAGCGGTTTGAACCATGTATTTTTGTCCTCTCTTTACTCAGCCCATTGGGTGATTGTAGATGTGGAGGTCAGGGGTTCACCCTACAGCTGGGTGTGACTAGATCTTTACTCAGCCCATTGGGTGATTGTAGATGTGGAGGTCAGGGGTTCACCCTACAGCTGGGTGTGACTAGATCTTTACTCAGCCCATTGGGAGATTGTAGATGTGAAGGTCAGGGGTTCACCCTGCAGCTGGGCGTGACTAGATCGGTCTACAGGCACAGTTTATGcaataaataaaatcaaataaatgtgTATCGGTCATGTACGTATATATAGCAATAGTTATAGCCTGGCCTGTGGCTTTAATCTCACTGCTCAACTCAGCCAGGCTGATAAACAAAGAGTCCCAGTTTGGTTCAGGTAAAATGGAGACAACCTAGATGAGGCTCTACTTCATGACTTTAGGCTTGTATAGCTTACCCTCTTACAGGCCTTGTGGTCAATAATCCACTGATTAACATGCTGGACATTCCTTGAGGCTTAGGCCTAGATAAAACCAATAGGAAAATAACAATATAAAAAACACAGGAAAAGGCCTGTTAAATGAAGCAGGCATCTACCAAACACTACCACAATAATAGAGGATTCAACTCATTCAGCCAAACCCTGTCTTTTAGTTTTTATCAGACACTTCTTGGCCTACAAGTGATGAATCTTTTCAAACTCCATGTCAACACAGGCAAACAGATGACAAATCAACTATGGATAATTACAGAAAGAGCACCCAAGAGAGCTGTTGTATCTACCCAGTAAAAAttgtaaatgtatatacagtgttccCGAGTAAATAAATAAACTCAAGTGAATGTACAAATGCACAGTCAACAGGACACATCTGGTCTACGTTAGTGGAATTACTGACAGAAAAATGAAATGAACATTTAACACTACCAGCGTAATTTCCAAGCATCTCTGCCAGAGAGGTTGTAAATAAGGCATTGCTCGGCATAATCGGGTGGTTTAGACTCTGCATGAGTAACATGGCTGTGGCAAGAGGTGAGAATGTTCTGCATTACTTCTGAATTAAAGAGAACACAGTACATATTGGATTTACATGCCCACCAATCAAATCAAGGCACAATTACTACTGCTCTGACTGGTGTGAGCAATTTTCATGGGATACTTTTTCAGCCAACAACCATAgctatacactaccaggttaaaGATTCCAAGAAATGAAAAAACACCTACAAAATATAATATTAATCACAGTGCCATCAAAGGAATAAAGTACAAATGTGGACATAGTATTAATAATTGAATGCACTGATCACCAGTAAAAACTACAGCATCCAGCGTACCACTTAACAACCAGCCTTGCCAAATTTAAtacatatatacactgaacaaaaatataaacacatgtaaagtgttggtcccatgtttcatgagctgaaataaaatatctcagaaatgttccatacgcccAAAAGGTTATTTCTCTCCAGTtttgggcacaaatttgtttacatccctgtcctttttaaatcgttgaaattgttgcatgttgcatttatatttttaggaaagtattcagacaactttac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU776261 lncRNA downstream 30783 18805460 ~ 18805663 (-) True G681676
TU776260 lncRNA downstream 31186 18804967 ~ 18805260 (-) True G681675
TU776259 lncRNA downstream 34483 18801763 ~ 18801963 (-) True G681674
TU776257 lncRNA downstream 36951 18799227 ~ 18799495 (-) True G681672
TU776242 lncRNA downstream 40064 18795574 ~ 18796382 (-) True G681657
TU776331 lncRNA upstream 35708 18874069 ~ 18876496 (-) True G681737
TU776338 lncRNA upstream 50334 18888695 ~ 18888976 (-) True G681744
TU776343 lncRNA upstream 55805 18894166 ~ 18970925 (-) True G681748
TU776329 lncRNA upstream 65220 18903581 ~ 18904548 (-) True G681735
TU776321 lncRNA upstream 66299 18904660 ~ 18906384 (-) False LOC110529535
XM_021611778.2 mRNA downstream 121626 18690451 ~ 18714820 (-) True LOC110529528
XM_021611777.2 mRNA downstream 148781 18676608 ~ 18687665 (-) True LOC110529527
XM_036984921.1 mRNA downstream 162250 18588818 ~ 18674196 (-) False LOC110529198
XR_005052824.1 mRNA downstream 162250 18588818 ~ 18674196 (-) False LOC110529198
XM_021611775.2 mRNA downstream 248452 18582904 ~ 18587994 (-) True LOC110529526
XM_021611785.2 mRNA upstream 38373 18876734 ~ 18883214 (-) False LOC110529532
XM_036984924.1 mRNA upstream 38373 18876734 ~ 18883562 (-) True LOC110529532
LOC110529199 mRNA upstream 50735 18889096 ~ 18895190 (-) True LOC110529199
LOC110529535 mRNA upstream 67927 18906288 ~ 18913467 (-) False LOC110529535
XM_021611787.2 mRNA upstream 75349 18913710 ~ 18921786 (-) False LOC110529533
TU776244 other downstream 44309 18791230 ~ 18792137 (-) True G681659
TU773944 other downstream 1721918 17113543 ~ 17114528 (-) True G679471
TU773640 other downstream 2206187 16625090 ~ 16630259 (-) False G679210
TU773642 other downstream 2206187 16625090 ~ 16630259 (-) True G679210
TU773511 other downstream 2403432 16432621 ~ 16433014 (-) True G679087
TU779858 other upstream 2640405 21478766 ~ 21479203 (-) True G684844
TU780899 other upstream 3082066 21920427 ~ 21924908 (-) False LOC110529207
TU780900 other upstream 3082066 21920427 ~ 21924908 (-) True LOC110529207
TU781111 other upstream 3320669 22159030 ~ 22161042 (-) False G685953
TU783285 other upstream 4778546 23616907 ~ 23621246 (-) True LOC110529643

Expression Profile