RNA id: TU776506


Basic Information

Item Value
RNA id TU776506
length 1563
lncRNA type antisense_over
GC content 0.51
exon number 3
gene id G681902
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 19167096 ~ 19169880 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAtctcctcctccagctgcagCCCTGTGGCCCCAGCCAGGAGGTCCTCCATCACTGAGAGGTCCCTCATAGACACCTTGACGTTGAAGGGCAGGGAGAACCTGTGGCAGACCTCTGAGAGCATGTACTGCTTCTTGTCGTGGACCACCTCCACAAAGCCGCCATCCAGACACATGGGGATCAGCACGGCCTTGTACTTCTTCCCCACCATCTTCTCACAGGCCAGGGCCTCCACCGTCTTTCTCCTGCCACCATAGATCACCTCGCTGGTCTCCCTTTTGTGGACCAGGTACTGGTCTCCCACCAGTACCGAGGACAGCCCCTCGTAGTCGGCCTCAAAGGCCCTGGTAGCCACCACGTGGAGCTGCTCCATGTCACTCTTGGCTACCTCTAGGTCATATGCTGTGGGGAACATCCGGGGCCTGCGCTTGAACCTTCCGTTGTAAGACACTGGAATGAGGAAGCGTCTTTGGGCCTCACTGCGGATCTCAGACGCTAGGATCCTCTTGGTCTGGTAGGCACTGTGGACAATGACTTGCTTAGAGGACGTCAGGAAACCCAATTCCTCCTGAACTTGTGATGGTGGCTCTATGATCTCAGCCCTGAAGGGGAAGACCTCGCTCGGCTTGGCAAAGACATCACGGAGTGACAGAGGCTGCATGAAACAGGCACCGTCACTCTCCTCGGTTACGTCCAACACCTCAACGTCAAGGGTAGATGGGATGAAAACAACGTTCTTCCCAAACTTGGACACAGTCTGGAGCTCATAGACAGGTGTGAGAACCAGATCTCCGCTGTAGTCCTCTGGCAACTTAGACACACACTTCTCCTTTGATGGCAAAGACTTGGCCCAAGTCACTGTCCTTTTCCTTCCTTTGGGCATTTTCCATTCCACCAGCTCCCTGAGGGTGTAGAACTGGTCGTCGGCACACTCATAGAACTCCCCAGTGTGCGAGAGCTTCACAGTGAAGATGTGCTTGGAGTCTTTCCGCGTGACCTCACAGTCAACATGGCTGTCTCCGTGCTTCGTCCTAAGAGCAGTGATTCTGAAGCTCTCCTCAGCCTGGAtggtcccctcagccagctgtaGTTCCTCAGGGCAGCGGAACTCTGGCTGGCCCAGGCACTCAGGGCTGATACACACTGAGTCAACAATCTCCTGTATACTGGCGTATGGCCTCTTGTCGGCCACGATCCTGAAAAGGCCTGGATAGTCgagagatagatctactgtcataGATTTGGAACCCTCAGACTGAAGTTCCACAATGAGTCTGGTGACACTGATCCCAATGATCTTCAGGAGCTCTCCATAGGAGAAACTCCACTCTCTTCCAAACAGCTCATACACAGAACCTGGTAGAAAGACATTTCAATGGATCTATTCTTTTGGCAATGAATGAACCTAAGTACAGTCGTCGATGGTCTATTCTCCTTGTAGAGTAACAGATCCAAGTAAGTAAGAACATAAGGGTGGTAACTCTATAATTGCTACACATGAATAAGCATGAATAATTCATTTATTAAGAATTTATATACTATTCATGAAAACGTATACATTTT

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU776502 lncRNA upstream 17039 19149719 ~ 19150057 (+) True G681898
TU776501 lncRNA upstream 17888 19148889 ~ 19149208 (+) True G681897
TU776478 lncRNA upstream 52446 19114395 ~ 19114650 (+) True G681877
TU776476 lncRNA upstream 54882 19111416 ~ 19112214 (+) True G681875
TU776475 lncRNA upstream 56417 19110460 ~ 19110679 (+) True G681874
TU776912 lncRNA downstream 252240 19422120 ~ 19422393 (+) True G682270
TU776978 lncRNA downstream 322493 19492373 ~ 19492579 (+) True G682332
TU777065 lncRNA downstream 449059 19618939 ~ 19619194 (+) True G682412
TU777066 lncRNA downstream 449321 19619201 ~ 19619440 (+) True G682413
TU777011 lncRNA downstream 467134 19637014 ~ 19638372 (+) False G682359
XM_021611805.2 mRNA upstream 5457 19157262 ~ 19161639 (+) True LOC110529547
XR_005052826.1 mRNA upstream 218990 18943159 ~ 18948106 (+) True LOC118965498
XM_021611794.2 mRNA upstream 230598 18924998 ~ 18936498 (+) True LOC110529539
XM_021611789.2 mRNA upstream 260702 18902235 ~ 18906394 (+) False LOC110529536
XM_036984925.1 mRNA upstream 260702 18902250 ~ 18906394 (+) True LOC110529536
LOC110529202 mRNA downstream 204893 19374773 ~ 19537068 (+) True LOC110529202
XM_036986830.1 mRNA downstream 365040 19534920 ~ 19539445 (+) True LOC110529203
XR_002474406.2 mRNA downstream 370738 19540618 ~ 19543748 (+) True LOC110529551
XM_021611811.2 mRNA downstream 422704 19592584 ~ 19632071 (+) False LOC110529552
XM_021611812.2 mRNA downstream 422704 19592584 ~ 19632071 (+) True LOC110529552
TU776513 other upstream 1456 19163936 ~ 19165640 (+) True G681909
TU773135 other upstream 2272261 16893159 ~ 16894835 (+) True LOC110529505
TU772807 other upstream 2778760 16387450 ~ 16388336 (+) True LOC110529493
TU772802 other upstream 2778860 16387450 ~ 16388236 (+) False LOC110529493
TU772798 other upstream 2779019 16387450 ~ 16388077 (+) False LOC110529493
TU777286 other downstream 558953 19728833 ~ 19729671 (+) True G682611
TU778522 other downstream 1392995 20562875 ~ 20563434 (+) True G683669
TU778611 other downstream 1457070 20626950 ~ 20632899 (+) True G683757
TU778731 other downstream 1537178 20707058 ~ 20707371 (+) True G683845
TU779216 other downstream 1907190 21077070 ~ 21078871 (+) False G684314

Expression Profile