RNA id: TU777414


Basic Information

Item Value
RNA id TU777414
length 1229
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G682735
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 19937965 ~ 19939193 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgccttgatgacagctttgcattctctcaaccagcttcacctggaatgcttttccaacagtcttgaaggagttcccacatatgctgagcacttgttggctgcttttccttaactctgcggtccaactcatcccaaactatctcaattgggttgaggttgggtgattgtggaggccaggtcatctgatgcagcactccatcactctccttgttcaaatagccctttcacagcctggaggtgtgttttgggtcattgtcctgttgaaaaacaaattatagtcccactaagcacaaaccagatgggatggcctattgcggcagaatgctgtggtagctatgctggttaagtgtgccttgaattctaaataaatcacaggcagtgtcaccagaaaagctccatcacacctcctcctccatgcttcatggtgggaaccacaagTGCAGAGATAATTTGTTCACCGACTCCCAAAAACACTTTACCAAAAATCAAGAATTTGGAGTTATCAgaataaaggacagatttccaccactCTAATTTCCAATGctcctgtttcttggcccaagcaggtcTATACTTCTTATTGGTgccctttagtagttgtttctttgcagcaatttgaccatgaagacctgattcccacagtctccactgaacagttgatgtggagatgtgtctgttacttgaactctgtgaagcatttatttgggctgcaatttctgaggctggtaactctaatgaacttatcctctgcagcagaagtaactctgggtcttcctttcctgtggtggtcctcatgagagccaatttcattatagcgcttgatggtttttgcgattgcacttgaagaaatgttcaaagttcttgacattttccgcaatgactgaccttcatgtcttaaagtaataatggactttaatttctctttgcttatttgagctgttcttgccataatattgacttggtttttaccaaataaggctatcttctgtataccacccataccttgtcacaacacaactgattggctcaaatgcattaaggaaatatATTCCACtaatttacttttaacaaggcacacctgttaattgaaatgtaagcgactacctcatgaagctggttgagaaaatgccaagagtgtgcaaagctgtcatcaaggcaaagggtggctattatGAAGCGTCTGAAATATAgaatatatattgatttgtttaacacttttttggttacta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU777278 lncRNA upstream 69762 19867100 ~ 19868203 (+) True G682605
TU777279 lncRNA upstream 74002 19857274 ~ 19863963 (+) True akap7
TU777078 lncRNA upstream 289470 19648203 ~ 19648495 (+) True G682425
TU777077 lncRNA upstream 289924 19647753 ~ 19648041 (+) True G682424
TU777011 lncRNA upstream 299593 19637014 ~ 19638372 (+) False G682359
TU777413 lncRNA downstream 400 19939593 ~ 19940086 (+) True G682734
TU777667 lncRNA downstream 11354 19950547 ~ 19950908 (+) True G682923
TU777669 lncRNA downstream 13013 19952206 ~ 19952430 (+) True G682925
TU777685 lncRNA downstream 28588 19967781 ~ 19968082 (+) True G682941
TU777716 lncRNA downstream 63479 20002672 ~ 20002953 (+) True G682972
XM_036984975.1 mRNA upstream 173 19932433 ~ 19937792 (+) False LOC101268947
XM_021611838.2 mRNA upstream 173 19932533 ~ 19937792 (+) False LOC101268947
XM_021611839.2 mRNA upstream 173 19932533 ~ 19937792 (+) True LOC101268947
XR_005052829.1 mRNA upstream 7718 19927752 ~ 19930247 (+) True LOC118965499
XR_005053036.1 mRNA upstream 61977 19875933 ~ 19875988 (+) True LOC118965655
XR_002474414.2 mRNA downstream 112347 20051540 ~ 20060435 (+) False LOC110529562
XR_005052831.1 mRNA downstream 120260 20059453 ~ 20060435 (+) True LOC110529562
XM_036984996.1 mRNA downstream 355446 20294639 ~ 20379353 (+) False LOC110529565
XM_036984982.1 mRNA downstream 355447 20294640 ~ 20379353 (+) False LOC110529565
XM_036984983.1 mRNA downstream 355447 20294640 ~ 20379353 (+) False LOC110529565
TU777286 other upstream 208294 19728833 ~ 19729671 (+) True G682611
TU776513 other upstream 772325 19163936 ~ 19165640 (+) True G681909
TU773135 other upstream 3043130 16893159 ~ 16894835 (+) True LOC110529505
TU772807 other upstream 3549629 16387450 ~ 16388336 (+) True LOC110529493
TU772802 other upstream 3549729 16387450 ~ 16388236 (+) False LOC110529493
TU778522 other downstream 623682 20562875 ~ 20563434 (+) True G683669
TU778611 other downstream 687757 20626950 ~ 20632899 (+) True G683757
TU778731 other downstream 767865 20707058 ~ 20707371 (+) True G683845
TU779216 other downstream 1137877 21077070 ~ 21078871 (+) False G684314
TU779504 other downstream 1480155 21419348 ~ 21424392 (+) False LOC110529590

Expression Profile