RNA id: TU777669



Basic Information


Item Value
RNA id TU777669
length 225
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G682925
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 19952206 ~ 19952430 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


catctggacaagaggagtacctatgtaagaatgctgttcattgactacagctcagcattcaacaccatagtacactccaagctcatcattaagcttgaggccctgggtctcaaccccaccctgtgcaattgggtcttggactttctgatgggccgcccccaggtggtgacggtaggaaacaacatctctacttcgctgatcctcaacactggggccccacaaggg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU777667 lncRNA upstream 1298 19950547 ~ 19950908 (+) True G682923
TU777413 lncRNA upstream 12120 19939593 ~ 19940086 (+) True G682734
TU777414 lncRNA upstream 13013 19937965 ~ 19939193 (+) True G682735
TU777278 lncRNA upstream 84003 19867100 ~ 19868203 (+) True G682605
TU777279 lncRNA upstream 88243 19857274 ~ 19863963 (+) True akap7
TU777685 lncRNA downstream 15351 19967781 ~ 19968082 (+) True G682941
TU777716 lncRNA downstream 50242 20002672 ~ 20002953 (+) True G682972
TU777760 lncRNA downstream 76383 20028813 ~ 20029013 (+) True G683015
TU777762 lncRNA downstream 77748 20030178 ~ 20030524 (+) True G683017
TU777769 lncRNA downstream 83579 20036009 ~ 20036312 (+) True G683024
XM_036984975.1 mRNA upstream 14414 19932433 ~ 19937792 (+) False LOC101268947
XM_021611838.2 mRNA upstream 14414 19932533 ~ 19937792 (+) False LOC101268947
XM_021611839.2 mRNA upstream 14414 19932533 ~ 19937792 (+) True LOC101268947
XR_005052829.1 mRNA upstream 21959 19927752 ~ 19930247 (+) True LOC118965499
XR_005053036.1 mRNA upstream 76218 19875933 ~ 19875988 (+) True LOC118965655
XR_002474414.2 mRNA downstream 99110 20051540 ~ 20060435 (+) False LOC110529562
XR_005052831.1 mRNA downstream 107023 20059453 ~ 20060435 (+) True LOC110529562
XM_036984996.1 mRNA downstream 342209 20294639 ~ 20379353 (+) False LOC110529565
XM_036984982.1 mRNA downstream 342210 20294640 ~ 20379353 (+) False LOC110529565
XM_036984983.1 mRNA downstream 342210 20294640 ~ 20379353 (+) False LOC110529565
TU777286 other upstream 222535 19728833 ~ 19729671 (+) True G682611
TU776513 other upstream 786566 19163936 ~ 19165640 (+) True G681909
TU773135 other upstream 3057371 16893159 ~ 16894835 (+) True LOC110529505
TU772807 other upstream 3563870 16387450 ~ 16388336 (+) True LOC110529493
TU772802 other upstream 3563970 16387450 ~ 16388236 (+) False LOC110529493
TU778522 other downstream 610445 20562875 ~ 20563434 (+) True G683669
TU778611 other downstream 674520 20626950 ~ 20632899 (+) True G683757
TU778731 other downstream 754628 20707058 ~ 20707371 (+) True G683845
TU779216 other downstream 1124640 21077070 ~ 21078871 (+) False G684314
TU779504 other downstream 1466918 21419348 ~ 21424392 (+) False LOC110529590

Expression Profile