RNA id: TU777762


Basic Information

Item Value
RNA id TU777762
length 347
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G683017
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 20030178 ~ 20030524 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAATTATTCATTACAAATTACCATTGGAATGAAGCTTTTTACTCGCTCCACTGCATCCACATAcactatatttacaaaagtatgtggacatcccttcaaattagtgaattccaactctatattaatgcccgtgactttggaatgagatgttcaatgagcatgtccaaatacttttggttatgtagtgtatttaAATCCACCATGTAAACCTTTATGGTTTAAGTCTTTAAACAGTCAGTGAAGGTCAATGGTAGGAGTGTGTAATTTTGTCACGTTTAATAAGAAAAGGTTGATTACATCACTGTCTTTCAAGCACATACAAAGCATCATCCTACTTAGAGAATAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU777760 lncRNA upstream 1165 20028813 ~ 20029013 (+) True G683015
TU777716 lncRNA upstream 27225 20002672 ~ 20002953 (+) True G682972
TU777685 lncRNA upstream 62096 19967781 ~ 19968082 (+) True G682941
TU777669 lncRNA upstream 77748 19952206 ~ 19952430 (+) True G682925
TU777667 lncRNA upstream 79270 19950547 ~ 19950908 (+) True G682923
TU777769 lncRNA downstream 5485 20036009 ~ 20036312 (+) True G683024
TU777814 lncRNA downstream 79613 20110137 ~ 20110418 (+) True G683065
TU777819 lncRNA downstream 86195 20116719 ~ 20119620 (+) False G683070
TU777820 lncRNA downstream 86195 20116719 ~ 20148567 (+) True G683070
TU777903 lncRNA downstream 181710 20212234 ~ 20234414 (+) True G683147
XM_036984975.1 mRNA upstream 92386 19932433 ~ 19937792 (+) False LOC101268947
XM_021611838.2 mRNA upstream 92386 19932533 ~ 19937792 (+) False LOC101268947
XM_021611839.2 mRNA upstream 92386 19932533 ~ 19937792 (+) True LOC101268947
XR_005052829.1 mRNA upstream 99931 19927752 ~ 19930247 (+) True LOC118965499
XR_005053036.1 mRNA upstream 154190 19875933 ~ 19875988 (+) True LOC118965655
XR_002474414.2 mRNA downstream 21016 20051540 ~ 20060435 (+) False LOC110529562
XR_005052831.1 mRNA downstream 28929 20059453 ~ 20060435 (+) True LOC110529562
XM_036984996.1 mRNA downstream 264115 20294639 ~ 20379353 (+) False LOC110529565
XM_036984982.1 mRNA downstream 264116 20294640 ~ 20379353 (+) False LOC110529565
XM_036984983.1 mRNA downstream 264116 20294640 ~ 20379353 (+) False LOC110529565
TU777286 other upstream 300507 19728833 ~ 19729671 (+) True G682611
TU776513 other upstream 864538 19163936 ~ 19165640 (+) True G681909
TU773135 other upstream 3135343 16893159 ~ 16894835 (+) True LOC110529505
TU772807 other upstream 3641842 16387450 ~ 16388336 (+) True LOC110529493
TU772802 other upstream 3641942 16387450 ~ 16388236 (+) False LOC110529493
TU778522 other downstream 532351 20562875 ~ 20563434 (+) True G683669
TU778611 other downstream 596426 20626950 ~ 20632899 (+) True G683757
TU778731 other downstream 676534 20707058 ~ 20707371 (+) True G683845
TU779216 other downstream 1046546 21077070 ~ 21078871 (+) False G684314
TU779504 other downstream 1388824 21419348 ~ 21424392 (+) False LOC110529590

Expression Profile