RNA id: TU777819


Basic Information

Item Value
RNA id TU777819
length 2880
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G683070
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 20116719 ~ 20148567 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCACAGTTTGATTTTATTATATTTACAGTCATTTTGAAAAGTAACATAAATAGAAAATTGCTAAATCTATTGAGAAGTAGAAGTCAGCGCTGAACCCAAACAAAACAACCAATGGAGTATTCAGGAATGTACTACAATGAGCAATTGAGTACCTGCAACAGTATTATACACAGCTCCCTTTGAATGTAGAGGAACTTATAGTACTGTAATGCCATATACAATCAaataattttatttttaattcagATCTTACATAACATATTGTCAAAAACTTTATCTGGGTCGAAAATGTTATGCTATATTTACAACGTTGAATCCTCTCTGTGAATGAAGGGGTCATGTAAGATTGCAGCAGTAAGTTATGTTGGTCTTCAACATTTCAGACTGGGTTATCTGGCACAGGGTGACAGTAACCGGTGTATACATCCACTATCCCCCAGAGgatgctggtgggaggagctataggacagcaggctcattgtaatggatggaatggaattaatggaactgatgatttctgtatgtgtgatgtgtttgataccattccaataTTCCATTCCAGCAactacaatgagcccgtcctcctatggctcctcccaccagcctcctctgccagCCACTCACATTAGAACAATTCACTGATAAAACACAACTGACTCTTCAATAGGTGTAATCTTGGATTTACTATGCAAGGAAGCATACTAGCGATCATATAGCTTTTACACAGTTGAATACCAATATACTGTCCCAGACACAAATGTTATGAAAAGGATAATGCTTAGGAATCAGAGTGCGCTCAGGGCGTTGTCAGATTGTACGTTCGTAAATTAAGAGAGGTACGCTCTTGGAGCGGTCAGAGAgtacactggacgctctggccgatgagTAGGTTTGATCCGAGTGTTCTGACCTCAGAATGTCAGTCAATCACCCAAGCGAACTAgactaatgttggctagcttgctagctacttccagacaaatAAGATAACACCTCACTCTGACAATTTTACTCCCCCTAGCAAAGCTGGTtatgctgttttcatgttatctagagcgttggtgactgtaactgtgctgctgtttgccAAAGTTCACTGACACCGGACATATTCAACTGGTGCtgagtgttcgtaaattcatcagttttTCTGCGCTCTgccacactcagacgagagtgctctgaactCGGAAGGTAGATAGCCAGATCGAATTTACGGAACGCACCCTTTATGTCTTCAGATGTTCTACGTGCTGTTACCATGGTGATGTTTAAACACGATTAGTAAGTGTATAGTAATGTTGCAAGGAAAACTTGCCTGAGTTTAGAAGATCATTTTATGCATCTCGAGGTTCCATTTGAATATTCTAGATCTTGGAAGGCCTGTTAGCATTACAATAATTTACAAAAGAGCCAACAGATTCACACCACTGAAATTGAAAACATAGAGAGGTCCTATGATATGGAGTTCTGGTCTACAAAGCTGAAGGATTTAGCGGGGAGATATACAAAAAAATGCTCACAGGGCTACCATTCAGTAGAAGAGTTACAGTATGACGATGCTATGACGATGATGACAGAACTGAGGCGGTCCTGATTGGTTCGGGGTTCCCGCGCTGTCCAATAGACAAAAGCACAAAGTTTCAGCCACAGCACAAACTCTACCACACATCTCCTTCTAGTCCTCACACCAGACTATCAGCAAGATATTGTTCCCAAGGTTTCCCTTGACACTTTGTACAGTTAGGAGTAAAAGAAAGGCCCACGTATACACAACATAACTTATTAGTGAACTATAAAAGAGTAAACACTGTCACACGTTAAAAAATGCCTAGAATTTAAAGAAGTTACATTTAGTTTTCTCTTTATCATTAGACTCAAGACTCCACTCTGTCTTAGAAAAGCACAAAATTCACATAACCTTACAGCGCAAAGACAGCTGCAGAAAGGCCAACGGTTACCTCTACCTAGTCTGGGATAATGTCCAGTGCTTTCAGAGATTAAATATTCAACAGATGTTGACACCTCATGCAAACAAATATGGTGTTATCCCCAAATTAACTTTTGAATTTATGTCCCAGAGACTAGCTCCAAAAATATGTATCTCTAGATAGCATCCAATATTTTGTCTAACTCATCTTTAACTATTGTTCTTGGCACTTTCAAGACAAATACATCCATCATAAGAAAAAGCAACTGGTTGCTTTTTCCATATTCAAAGTTTTATCCCATGCAATTGCCCAACTCAAGATGGAATTCCAACAGCCAAagtgtattgtaaacacatcatgGTTCACATGTACATTTATTTCTAATCAACTCTTTAGAATGGGCAATAGGACTACTTCTGATGACTAAAACCATATCGATCAGTTATTGAACATTGTTTAAGTGAAGAGTATTTCTAATCAAGTTAATCAGAACACATTGAAACTCTGCGACATCACTTAACTAGTGCTCTCAGAACTTGGCATTCCTTTTGTCCGGAATCTTGATCCATTTGAACACTGTCCAGAGGAATCAAATCAATGTTTTCCCTTAATATTTCAGTCATTCAGCTGTCAGAAAGAGAGCAAGAACCAGTATGGAGGAGAGATATGCATCCTGTAAGGTCAACACAGCCATAGGAGGGTGTTCTTGCACCTGCCTGGCCCCTCGTCCAGGCCAAGACTGTGACTCCACTGAGCAGAGGCTGAGCAGAGAGACAAAGGAAATCCAGTGTTTTTATGAGTCTTTGAGGTTAAAGTGTAGAGTCTCACTTCCTCCACACAGTTTGTAAGACACTGTATTATTTTAAGACATTTACGAAATGAAACAAAAAGTTAAAACGGTAGCTCTCTATTTGATTGGTACATAAGGCAGCTGTCCTTTGTTACTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU777814 lncRNA upstream 6301 20110137 ~ 20110418 (+) True G683065
TU777769 lncRNA upstream 80407 20036009 ~ 20036312 (+) True G683024
TU777762 lncRNA upstream 86195 20030178 ~ 20030524 (+) True G683017
TU777760 lncRNA upstream 87706 20028813 ~ 20029013 (+) True G683015
TU777716 lncRNA upstream 113766 20002672 ~ 20002953 (+) True G682972
TU777903 lncRNA downstream 92614 20212234 ~ 20234414 (+) True G683147
TU777950 lncRNA downstream 150501 20270121 ~ 20270348 (+) True G683193
TU777953 lncRNA downstream 159427 20279047 ~ 20279250 (+) True G683196
TU777954 lncRNA downstream 159858 20279478 ~ 20279706 (+) True G683197
TU778196 lncRNA downstream 249558 20369178 ~ 20379330 (+) True LOC110529565
XR_002474414.2 mRNA upstream 56284 20051540 ~ 20060435 (+) False LOC110529562
XR_005052831.1 mRNA upstream 56284 20059453 ~ 20060435 (+) True LOC110529562
XM_036984975.1 mRNA upstream 178927 19932433 ~ 19937792 (+) False LOC101268947
XM_036984996.1 mRNA downstream 175019 20294639 ~ 20379353 (+) False LOC110529565
XM_036984982.1 mRNA downstream 175020 20294640 ~ 20379353 (+) False LOC110529565
XM_036984983.1 mRNA downstream 175020 20294640 ~ 20379353 (+) False LOC110529565
XM_036984984.1 mRNA downstream 175020 20294640 ~ 20379353 (+) False LOC110529565
XM_036984985.1 mRNA downstream 175020 20294640 ~ 20379353 (+) False LOC110529565
TU777286 other upstream 387048 19728833 ~ 19729671 (+) True G682611
TU776513 other upstream 951079 19163936 ~ 19165640 (+) True G681909
TU773135 other upstream 3221884 16893159 ~ 16894835 (+) True LOC110529505
TU772807 other upstream 3728383 16387450 ~ 16388336 (+) True LOC110529493
TU772802 other upstream 3728483 16387450 ~ 16388236 (+) False LOC110529493
TU778522 other downstream 443255 20562875 ~ 20563434 (+) True G683669
TU778611 other downstream 507330 20626950 ~ 20632899 (+) True G683757
TU778731 other downstream 587438 20707058 ~ 20707371 (+) True G683845
TU779216 other downstream 957450 21077070 ~ 21078871 (+) False G684314
TU779504 other downstream 1299728 21419348 ~ 21424392 (+) False LOC110529590

Expression Profile