RNA id: TU777950


Basic Information

Item Value
RNA id TU777950
length 228
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G683193
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 20270121 ~ 20270348 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatccctgctggtcatctatgaacgtttgaacatcttgaagaacaatctggccttaaatggccatgtaccctttaatctccacctggcacagccagtagaggacctgccacccctcagagcctggttcctctctaggtttcttcctaggttcctgtctttctagggaattttttctacatctgcattgctttgtgtttggggtttttggctgggtttctgtatagcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU777903 lncRNA upstream 35707 20212234 ~ 20234414 (+) True G683147
TU777820 lncRNA upstream 121554 20116719 ~ 20148567 (+) True G683070
TU777819 lncRNA upstream 150501 20116719 ~ 20119620 (+) False G683070
TU777814 lncRNA upstream 159703 20110137 ~ 20110418 (+) True G683065
TU777769 lncRNA upstream 233809 20036009 ~ 20036312 (+) True G683024
TU777953 lncRNA downstream 8699 20279047 ~ 20279250 (+) True G683196
TU777954 lncRNA downstream 9130 20279478 ~ 20279706 (+) True G683197
TU778196 lncRNA downstream 98830 20369178 ~ 20379330 (+) True LOC110529565
TU778302 lncRNA downstream 142561 20412909 ~ 20413122 (+) True G683466
TU778313 lncRNA downstream 166948 20437296 ~ 20439013 (+) False G683477
XR_002474414.2 mRNA upstream 209686 20051540 ~ 20060435 (+) False LOC110529562
XR_005052831.1 mRNA upstream 209686 20059453 ~ 20060435 (+) True LOC110529562
XM_036984975.1 mRNA upstream 332329 19932433 ~ 19937792 (+) False LOC101268947
XM_036984996.1 mRNA downstream 24291 20294639 ~ 20379353 (+) False LOC110529565
XM_036984982.1 mRNA downstream 24292 20294640 ~ 20379353 (+) False LOC110529565
XM_036984983.1 mRNA downstream 24292 20294640 ~ 20379353 (+) False LOC110529565
XM_036984984.1 mRNA downstream 24292 20294640 ~ 20379353 (+) False LOC110529565
XM_036984985.1 mRNA downstream 24292 20294640 ~ 20379353 (+) False LOC110529565
TU777286 other upstream 540450 19728833 ~ 19729671 (+) True G682611
TU776513 other upstream 1104481 19163936 ~ 19165640 (+) True G681909
TU773135 other upstream 3375286 16893159 ~ 16894835 (+) True LOC110529505
TU772807 other upstream 3881785 16387450 ~ 16388336 (+) True LOC110529493
TU772802 other upstream 3881885 16387450 ~ 16388236 (+) False LOC110529493
TU778522 other downstream 292527 20562875 ~ 20563434 (+) True G683669
TU778611 other downstream 356602 20626950 ~ 20632899 (+) True G683757
TU778731 other downstream 436710 20707058 ~ 20707371 (+) True G683845
TU779216 other downstream 806722 21077070 ~ 21078871 (+) False G684314
TU779504 other downstream 1149000 21419348 ~ 21424392 (+) False LOC110529590

Expression Profile