RNA id: TU778320



Basic Information


Item Value
RNA id TU778320
length 414
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G683477
representative False

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 20437296 ~ 20439013 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTTTGAGTGCATGTTCTTTTATTTTAGTATGTTTCACACAGGTTTACAAATGATGAGCAATCACCAAATGAACATATATAAAAATGTCTTACAAAAAAGACTTCCAGCCCATGTTGTAAAACATTTGGAAGGATGAAGTGCAAAGGTCAGCATGCAGTAAAAACAAAACACTTCTTGGCTGTAGTCCAGTAAAATGGACTCAAATGATTTAACTAGTGATGTCTCCCAGCTCATGCCTTCTCATAGGTACGCACTGCCACAATGTCTTCAAATGTAAGAGTCGAAGTTGTCACTGTCGACCAGTTTCCAGGTGGCACAGAAGGCATCAACCATGATGAAGAGTTAGAGGACCGTGCAATAAGAGAACTGAGGTAAAGTTGATACGGATGGTGTCGGAATCAATATGAGCTTTTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU778302 lncRNA upstream 24174 20412909 ~ 20413122 (+) True G683466
TU778196 lncRNA upstream 57966 20369178 ~ 20379330 (+) True LOC110529565
TU777954 lncRNA upstream 157590 20279478 ~ 20279706 (+) True G683197
TU777953 lncRNA upstream 158046 20279047 ~ 20279250 (+) True G683196
TU777950 lncRNA upstream 166948 20270121 ~ 20270348 (+) True G683193
TU778450 lncRNA downstream 69886 20508899 ~ 20509112 (+) True G683599
TU778484 lncRNA downstream 91846 20530859 ~ 20531075 (+) True G683633
TU778524 lncRNA downstream 124474 20563487 ~ 20563790 (+) True G683671
TU778553 lncRNA downstream 147594 20586607 ~ 20586818 (+) True G683700
TU778613 lncRNA downstream 194468 20633481 ~ 20634396 (+) True G683759
XM_036984994.1 mRNA upstream 57943 20294640 ~ 20379353 (+) False LOC110529565
XM_021611912.2 mRNA downstream 32144 20471157 ~ 20477447 (+) True LOC110529573
XM_021611918.2 mRNA downstream 196392 20635405 ~ 20637793 (+) True LOC110529577
LOC110529580 mRNA downstream 216146 20655159 ~ 20682999 (+) False LOC110529580
XM_021611921.2 mRNA downstream 386501 20825514 ~ 20992358 (+) True LOC110529582
XM_036985002.1 mRNA downstream 571308 21010321 ~ 21116297 (+) False LOC110529583
TU777286 other upstream 707625 19728833 ~ 19729671 (+) True G682611
TU776513 other upstream 1271656 19163936 ~ 19165640 (+) True G681909
TU773135 other upstream 3542461 16893159 ~ 16894835 (+) True LOC110529505
TU772807 other upstream 4048960 16387450 ~ 16388336 (+) True LOC110529493
TU772802 other upstream 4049060 16387450 ~ 16388236 (+) False LOC110529493
TU778522 other downstream 123862 20562875 ~ 20563434 (+) True G683669
TU778611 other downstream 187937 20626950 ~ 20632899 (+) True G683757
TU778731 other downstream 268045 20707058 ~ 20707371 (+) True G683845
TU779216 other downstream 638057 21077070 ~ 21078871 (+) False G684314
TU779504 other downstream 980335 21419348 ~ 21424392 (+) False LOC110529590

Expression Profile