RNA id: TU778731



Basic Information


Item Value
RNA id TU778731
length 314
RNA type TUCP
GC content 0.51
exon number 1
gene id G683845
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 20707058 ~ 20707371 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTGTGGCTtgtaggcctctccaggtctcgcacccactgtggtggaggatcggtgatgatctggatgcatgaatcaagccacgtacaaggttgtcctggaagaaaacttgcttccttctgctctgacaatgttccccaactctgaggaTTGCTTTTTCCAGCAGGGCAATGCTCaatgccacacagccaggtcaatcaaTGTGTGGATGGAGGAacaccagatcaagaccctgtcatggccagcccagtctccagacctgaaccccattgaaaacctctggaatgtgatcaagaggaagatagatggtcacaagc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU778714 lncRNA upstream 12323 20694477 ~ 20694735 (+) True G683828
TU778658 lncRNA upstream 19850 20686910 ~ 20687208 (+) True G683783
TU778621 lncRNA upstream 29989 20655722 ~ 20677069 (+) False LOC110529580
TU778619 lncRNA upstream 46144 20652867 ~ 20660914 (+) False LOC110529580
TU778620 lncRNA upstream 46144 20652867 ~ 20660914 (+) False LOC110529580
TU778735 lncRNA downstream 1462 20708833 ~ 20709047 (+) True G683849
TU778736 lncRNA downstream 5965 20713336 ~ 20713774 (+) True G683850
TU778771 lncRNA downstream 27337 20734708 ~ 20734910 (+) True G683885
TU778789 lncRNA downstream 42328 20749699 ~ 20749914 (+) True G683903
TU778810 lncRNA downstream 54739 20762110 ~ 20762365 (+) True G683924
LOC110529580 mRNA upstream 24059 20655159 ~ 20682999 (+) False LOC110529580
XM_021611918.2 mRNA upstream 69265 20635405 ~ 20637793 (+) True LOC110529577
XM_021611912.2 mRNA upstream 229611 20471157 ~ 20477447 (+) True LOC110529573
XM_036984995.1 mRNA upstream 327705 20294640 ~ 20379353 (+) False LOC110529565
XM_021611921.2 mRNA downstream 118143 20825514 ~ 20992358 (+) True LOC110529582
XM_036985002.1 mRNA downstream 302950 21010321 ~ 21116297 (+) False LOC110529583
XM_036985008.1 mRNA downstream 302960 21010331 ~ 21111196 (+) False LOC110529583
XM_036985006.1 mRNA downstream 302960 21010331 ~ 21116297 (+) False LOC110529583
XM_036985003.1 mRNA downstream 302961 21010332 ~ 21116297 (+) False LOC110529583
TU778611 other upstream 74159 20626950 ~ 20632899 (+) True G683757
TU778522 other upstream 143624 20562875 ~ 20563434 (+) True G683669
TU777286 other upstream 977387 19728833 ~ 19729671 (+) True G682611
TU776513 other upstream 1541418 19163936 ~ 19165640 (+) True G681909
TU773135 other upstream 3812223 16893159 ~ 16894835 (+) True LOC110529505
TU779216 other downstream 369699 21077070 ~ 21078871 (+) False G684314
TU779504 other downstream 711977 21419348 ~ 21424392 (+) False LOC110529590
TU779505 other downstream 711977 21419348 ~ 21422800 (+) False LOC110529590
TU779521 other downstream 711977 21419348 ~ 21424392 (+) False LOC110529590
TU779524 other downstream 711977 21419348 ~ 21424564 (+) False LOC110529590

Expression Profile