RNA id: TU779477


Basic Information

Item Value
RNA id TU779477
length 2983
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G684548
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 21389871 ~ 21392904 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTTCATTTAAAATGGGTACACATGTAATTGGTTTCTATATCGTTTTTCTAAATCAATAAGAAATGTTTGACATATTATTTACAATCATACACAGATGAACAACATGGTTGCCATGGTTACTTCAGCGCTACACAGGAAACATTATTCACAATGCGAAAACCCCTTCCAGGCCCTACCCCAGTTCACAGTGGCGTTGGCACTGTTTACAACTAGAAGCCCATGTCTGTGCATGTGTTTATTTCCCCACCAGACTGAACATGAAGATTAAAATAAACATTCACAAATGAAGTACAAGCCTCCTACAAGGTCACATGTTCATAATTGTTCATTAATGCACCCACAGCCATATTTATAATTAGCTGCTTATAGCCAGCATACTGGAAACTGACGGAGCTTTCTGCCATCCCCTTGTCGATCAATCAGCAGGGAGAACAGTCAACTGAAAGGAAGGAGTAATTAAAATAGGCTTTAGTCGTTCTACATCAGCTGTAAAAACTGTTAACATCTCATATAAGACTTTTGGCTCATGAGCACCACTATCAAAACTACTGAAATTATAGAAATGTTCAGAGCATCACTTTAAGACAATTTTTTACAGCAAAATTCTCATGGATAGGAAGGAATCTTTTAAGACAATAAACCTCTACAAAATTACCAATTTAttgtatagagaaagagagagaagctcaGTCTGTCACCTTTTCTCATGTTACACTGGATCAAATCTAATCTCCTAAAGGCATCGCTAGGGTTGTTAGAGAAGTAAATATTGCATTTTGGATAAATGAGACACCAACATTTCAGCGTTAAAAAATTCCTAAGCTTACTAGAGGAAAGTCCTCTCCCTTGCGAGGATGCGTTGTGAACATAACGCAATTTCCCTTCTTTCTCAATGACTGGCGTTTTcaacatttatttaaatgttttgggTTGGCCAATAGGGGGACGATAGCATCGTATATCAATGTTGTATGGGTACATAATTGCGCAAGGACAAAGGCTGACATCGCCCAACGTAATTTCATGTAGTTCTCCATTTCTGCAGCCCATATGCCATCACTTGGTCTAAAAGACTGACATGAAGAGTGGATTTAAAGCAAATCTGCCTCAATGTTTACACGCAGCTGCCACATCACAAAACACTACACTCAACCATCTTCCATTTGAGGGGGATGTTAAGACTTATGTAAAGTGCTGCATCAGAGAGTAGAGTAGCAGTACAGTGGTTTGAGCTGCTCTCAGCTGCAGGTGTGTAAGCCTGCCTGTATCgagaacacaacacacattagTATTTCAAACAAAGCGTTTAAAAAGAAGTGTTTGAAGATGCTTTCCCTTTGAATGATGGTGCAGTCCACCATGCATTTGAATGACTGCTGCATATCAATTCAGAATGACTAGCATCCTGCATCCGAGTGCCTCTCCCTAGGCACACAGCTTTCAGATGGTGAAACACATCCTTGGTTATAAGTCAGTGCAAATAAAACATTCAATTAATATCTAACACATCCAAGGTTACTACAGCTCCATTGTTCAATAGTTGATCATTTCAGGTTAAATCCAGCAGGCCTTTCGGTGCATACATTACAGGGAGTAAAACACTTGTTCACCTTACCATAGACCACATTACATGTGAGGGGACATGCAGAGGACAAGATCAGACAACACAACTCCATAAATCAACCTTTTACATCGGTTCAATTTAGCTCGCAGGAAGATATCAGCTGTTCAGTCTACCTTTAGAAGACGCTGAGGGAATCCAACCCAAACAAAGCATATAGGTGTACTGAATATATGGGGTTTTCAGTCACATGTATTGATTAACCTTCCTATGACAACCCAACCACTGGCTAGTGAGGAATTGGGAGTTTCAGTCCTATGGGTAATTAGTTAGCATTATGGTGTAAATGCATACAGCCACCTGgagtgttgtttgaacaggtaaaAAGCccaggttggtgatttactgccacctggagtgttgtttgaacaggtaaaAAGCccaggttggtgatttactgccacctggagtgttgtttgaacagGTAAAAAGCccaggttggtgatttactgccacctggaatgttgtttgaacaggtaaaAAGCccaggttggtgatttactgccaccttcagttatggaatgtttgcgtACAAGTATAATTCATTGGCAGATCTCTCCTGAAGTCCAAAATGGTatcatgtgatccttccttaaccaataggaagtcccacccagttgactacttcaaaaatGGTTGAagtcctcaatggcactgcccatgctaaaaTTGGCATTTGGGCACTAGAGTCGTCTATCTAAGATATCCCTACAGTGTAAATACTCCTGTATGCCATGTAACCAGAGAGAAAGGAAAATAAAATACTGAATCTGGGTTTTAAACAAGTTCATGAGATGAAAGAAATAGCAAAACACTTTAATACAAGAATTAGTCAATCTTCACATGGATTAACAACAACAGACAGCAGCATTGAGGATTAAGGGGCTCAACATGCAAAAATCTTAATATTATGGAGAACGGGGTGAGAACCTAGTAATTCAACACCAAATAAAATAGTGTTGGTCATGGGGGAAATTGTATACAGACAACTGCTTTATTTTTCATCCTGATTGATTGCAAAGATTGGATTTTGTGTAGGTTTAATGTAACTTGCTGGCTgagtttcacacatgtacaaaagcagacacacacagtccacCAATAGTAACTCTGAATGAAGACACAGCACAACCATGTAGTCAGACATCCTTAACATGCAGAGTATAGTCACGTATCACAGAGCTCTCGTTCCACATCCTCCCGTACCATATTGATCAAGCGCTACATTTGAAGCACACTTATATGAAGTATAATTTCCAGAAAAGCCCCAAGGTCCTCCATGCAGTCCtttacagagatggagagacctGAAGAGCAAGGTTGTTGTTTAGCATTAAACTTTCTGCCTGGCACATTCCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU779471 lncRNA upstream 1654 21388003 ~ 21388217 (+) True G684547
TU779327 lncRNA upstream 199702 21187182 ~ 21190169 (+) True G684413
TU779314 lncRNA upstream 266999 21122138 ~ 21122872 (+) True G684400
TU779217 lncRNA upstream 311998 21077070 ~ 21077873 (+) True G684314
TU779215 lncRNA upstream 312080 21077070 ~ 21077791 (+) False G684314
TU779487 lncRNA downstream 10046 21402950 ~ 21403576 (+) True G684554
TU779501 lncRNA downstream 26444 21419348 ~ 21424564 (+) False LOC110529590
TU779515 lncRNA downstream 26444 21419348 ~ 21424564 (+) False LOC110529590
TU779522 lncRNA downstream 30018 21422922 ~ 21424564 (+) True LOC110529590
TU779874 lncRNA downstream 96635 21489539 ~ 21489980 (+) True G684860
XM_021611926.2 mRNA upstream 159761 21143069 ~ 21230110 (+) False LOC110529585
XM_021611924.2 mRNA upstream 159761 21154291 ~ 21230110 (+) True LOC110529585
XM_021611923.2 mRNA upstream 253046 21117379 ~ 21136825 (+) True mcm9
XM_036985005.1 mRNA upstream 273574 21010334 ~ 21116297 (+) False LOC110529583
XM_036985013.1 mRNA downstream 13288 21406192 ~ 21422857 (+) False LOC110529590
XM_036985014.1 mRNA downstream 13288 21406192 ~ 21422857 (+) False LOC110529590
XM_021614352.2 mRNA downstream 320256 21713160 ~ 21722182 (+) True LOC110531076
XM_021611947.2 mRNA downstream 379159 21772063 ~ 21774545 (+) True LOC110529595
XM_021611949.2 mRNA downstream 386966 21779870 ~ 21782714 (+) True LOC110529596
TU779216 other upstream 311000 21077070 ~ 21078871 (+) False G684314
TU778731 other upstream 682500 20707058 ~ 20707371 (+) True G683845
TU778611 other upstream 756972 20626950 ~ 20632899 (+) True G683757
TU778522 other upstream 826437 20562875 ~ 20563434 (+) True G683669
TU777286 other upstream 1660200 19728833 ~ 19729671 (+) True G682611
TU779504 other downstream 26444 21419348 ~ 21424392 (+) False LOC110529590
TU779505 other downstream 26444 21419348 ~ 21422800 (+) False LOC110529590
TU779521 other downstream 26444 21419348 ~ 21424392 (+) False LOC110529590
TU779524 other downstream 26444 21419348 ~ 21424564 (+) False LOC110529590
TU779525 other downstream 26444 21419348 ~ 21424564 (+) False LOC110529590

Expression Profile