RNA id: TU780039


Basic Information

Item Value
RNA id TU780039
length 290
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G685006
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 21521745 ~ 21522034 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGTTCTGGACCCAGGCCATCCTCTCACCAGGTTGCTGATCAATAAATATGATTAGCAGCTGAGGCACCCGAGCCCAGAGAGGGTGTTTGCTGAGTTACGTTCAAGGTTCTGGATACTGAGAGGGAGGGCAGCCATTCGCCGTTTTCAGCTTGGCACCGAATGGCACCAAATGCAGGAAGTGGTGAGGCCAACCTAGGATGGCTGACCTGCCTCCAGTCCGACTGCGGCTCCACAAGCCCACATTTGATTCTACGGGCATGGGCTGCTTTAGACTGTATATCATCAAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU780037 lncRNA downstream 1391 21520123 ~ 21520354 (-) True G685004
TU779878 lncRNA downstream 29819 21491709 ~ 21491926 (-) True G684864
TU779877 lncRNA downstream 30173 21491290 ~ 21491572 (-) True G684863
TU779851 lncRNA downstream 49919 21471615 ~ 21471826 (-) True G684837
TU779779 lncRNA downstream 97206 21422922 ~ 21424539 (-) True G684767
TU780046 lncRNA upstream 8127 21530161 ~ 21530509 (-) True G685013
TU780050 lncRNA upstream 14023 21536057 ~ 21536342 (-) True G685017
TU780051 lncRNA upstream 14546 21536580 ~ 21536886 (-) True G685018
TU780053 lncRNA upstream 15692 21537726 ~ 21538063 (-) True G685020
TU780054 lncRNA upstream 16082 21538116 ~ 21538315 (-) True G685021
XM_021611937.2 mRNA downstream 17098 21499465 ~ 21504647 (-) True LOC110529593
XM_021611936.2 mRNA downstream 17100 21499465 ~ 21504645 (-) False LOC110529593
XM_021611935.2 mRNA downstream 52451 21425619 ~ 21469294 (-) True LOC110529592
XM_021611932.2 mRNA downstream 115674 21401943 ~ 21406071 (-) False LOC110529589
XM_021611931.2 mRNA downstream 120635 21392338 ~ 21401110 (-) True LOC110529588
XM_021611330.2 mRNA upstream 17848 21539882 ~ 21545761 (-) False LOC110529205
trnal-cag-4 mRNA upstream 32024 21554058 ~ 21554140 (-) True trnal-cag-4
XM_021611939.2 mRNA upstream 36924 21558958 ~ 21688056 (-) False afdna
XM_021611943.2 mRNA upstream 36924 21558958 ~ 21688056 (-) False afdna
XM_021611946.2 mRNA upstream 36924 21558958 ~ 21688056 (-) False afdna
TU779858 other downstream 42542 21478766 ~ 21479203 (-) True G684844
TU776244 other downstream 2729608 18791230 ~ 18792137 (-) True G681659
TU773944 other downstream 4407217 17113543 ~ 17114528 (-) True G679471
TU773640 other downstream 4891486 16625090 ~ 16630259 (-) False G679210
TU780899 other upstream 398393 21920427 ~ 21924908 (-) False LOC110529207
TU780900 other upstream 398393 21920427 ~ 21924908 (-) True LOC110529207
TU781111 other upstream 636996 22159030 ~ 22161042 (-) False G685953
TU783285 other upstream 2094873 23616907 ~ 23621246 (-) True LOC110529643
TU783300 other upstream 2113275 23635309 ~ 23637408 (-) True G687890

Expression Profile