RNA id: TU780822


Basic Information

Item Value
RNA id TU780822
length 466
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G685707
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 21728885 ~ 21729350 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCACGCACCCCTGTccaaacaggaagcaccctaCCCCCAACCATAAACTGCCCCTCTCAGTTCTCCCTACCTCACGATCCCCTGACACACAAATACCTtcttgcataaacacacacaccccatcccccctctactggtcgggtgcccAGAGCAGAAGATTCTGCTGTGCACCATtggggctcctgctctggctggAGCAGGTCCGCCTCCAACCCTTCGGGACCATTCAGAAGGCGACaggacaagactccacctacattattctatgtataaaaactgTTGTAACCTTTGTCTAAGCCCTTTTTCAGCTAACTCCATTTGAGCTATATGAATCAGGTCCGTGCTCGTTAAAACTGCAGGACAAGATATATTTTGACtcaataaactgcctttttgttacaactgaaatccactctgtccagcgtccatgatttggtctcacTCTCCTGTAAGTTAATCATCAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU780821 lncRNA downstream 619 21727931 ~ 21728266 (-) True G685706
TU780820 lncRNA downstream 1086 21727488 ~ 21727799 (-) True G685705
TU780810 lncRNA downstream 6755 21715287 ~ 21722130 (-) True G685696
TU780134 lncRNA downstream 21775 21706908 ~ 21707110 (-) True G685098
TU780123 lncRNA downstream 29969 21698665 ~ 21698916 (-) True G685087
TU780838 lncRNA upstream 21651 21751001 ~ 21798022 (-) True G685721
TU780864 lncRNA upstream 42891 21772241 ~ 21781290 (-) True G685740
TU780914 lncRNA upstream 157111 21886461 ~ 21886735 (-) True G685776
TU780925 lncRNA upstream 183614 21912964 ~ 21913189 (-) True G685784
TU780893 lncRNA upstream 197697 21927047 ~ 21929631 (-) True G685762
XM_036985023.1 mRNA downstream 40821 21558958 ~ 21688064 (-) True afdna
XM_036985021.1 mRNA downstream 40825 21558958 ~ 21688060 (-) False afdna
XM_036985022.1 mRNA downstream 40825 21558958 ~ 21688060 (-) False afdna
XM_036985017.1 mRNA downstream 40826 21558958 ~ 21688059 (-) False afdna
XM_021611951.2 mRNA upstream 87362 21816712 ~ 21822446 (-) True LOC110529598
XM_021611952.2 mRNA upstream 103178 21832528 ~ 21872461 (-) False LOC110529599
XM_036985028.1 mRNA upstream 103178 21832528 ~ 21872462 (-) True LOC110529599
XM_036985029.1 mRNA upstream 158623 21887973 ~ 21905014 (-) False ttc13
XM_021611955.2 mRNA upstream 158623 21887973 ~ 21905043 (-) False ttc13
TU779858 other downstream 249682 21478766 ~ 21479203 (-) True G684844
TU776244 other downstream 2936748 18791230 ~ 18792137 (-) True G681659
TU773944 other downstream 4614357 17113543 ~ 17114528 (-) True G679471
TU773640 other downstream 5098626 16625090 ~ 16630259 (-) False G679210
TU780899 other upstream 191077 21920427 ~ 21924908 (-) False LOC110529207
TU780900 other upstream 191077 21920427 ~ 21924908 (-) True LOC110529207
TU781111 other upstream 429680 22159030 ~ 22161042 (-) False G685953
TU783285 other upstream 1887557 23616907 ~ 23621246 (-) True LOC110529643
TU783300 other upstream 1905959 23635309 ~ 23637408 (-) True G687890

Expression Profile