RNA id: TU780226



Basic Information


Item Value
RNA id TU780226
length 367
lncRNA type antisense_over
GC content 0.51
exon number 2
gene id G685183
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 21864060 ~ 21864651 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AATATTTTAAAAACCTTAGTGTTTGATTCATGTATCTCCCGGCAATCTTTTTGACATCTCCCGTTGCTTTGACTTGGCAGGTGGACACATAGTGCTGGTCGTCACCACACTCTCCTGCCTTGGTCTCCCCACACACATTCAGGTAGTAGAAATAGTTGTCCTTCCCATCGCTGCTCTTGTCCTCAGCCATATAGGGGTCGTCTGTAGGGCCGAGGGTGAGGTGGGTGAGGTCTATGTTGATGTCGTGCTGCTTGCTGGACAGGGTGCAGTTGTGACTCTCCAGGTAGTCTCTGTGGCAGGCATACTCCGTCACCCACTCTACCTCATACCTGCAGTTGGACTTGGCTGTCATCTTGGGGTCACTACC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU780202 lncRNA upstream 38775 21824969 ~ 21825285 (+) True G685164
TU780201 lncRNA upstream 39287 21824556 ~ 21824773 (+) True G685163
TU780200 lncRNA upstream 40293 21823562 ~ 21823767 (+) True G685162
TU780198 lncRNA upstream 41043 21822793 ~ 21823017 (+) True G685160
TU780153 lncRNA upstream 115026 21748512 ~ 21749034 (+) True G685116
TU780240 lncRNA downstream 40500 21905151 ~ 21912494 (+) False LOC110529604
TU780243 lncRNA downstream 40500 21905151 ~ 21912494 (+) True LOC110529604
TU780262 lncRNA downstream 48922 21913573 ~ 21913824 (+) True G685212
TU780268 lncRNA downstream 61285 21925936 ~ 21926280 (+) True G685215
TU780437 lncRNA downstream 295972 22160623 ~ 22161261 (+) True G685365
XM_021611950.2 mRNA upstream 47370 21789216 ~ 21816690 (+) True LOC110529597
XM_021611949.2 mRNA upstream 81346 21779870 ~ 21782714 (+) True LOC110529596
XM_021611947.2 mRNA upstream 89515 21772063 ~ 21774545 (+) True LOC110529595
XM_021614352.2 mRNA upstream 141878 21713160 ~ 21722182 (+) True LOC110531076
XM_036985014.1 mRNA upstream 441203 21406192 ~ 21422857 (+) False LOC110529590
XM_021611953.2 mRNA downstream 9748 21874399 ~ 21876744 (+) True LOC110529600
XM_021611954.2 mRNA downstream 12243 21876894 ~ 21879588 (+) True LOC110529601
XR_002474422.2 mRNA downstream 40360 21905011 ~ 21911429 (+) False LOC110529604
XR_005052833.1 mRNA downstream 40360 21905011 ~ 21911429 (+) False LOC110529604
XM_021611961.2 mRNA downstream 62359 21927010 ~ 21929650 (+) True LOC110529606
TU779524 other upstream 439496 21419348 ~ 21424564 (+) False LOC110529590
TU779525 other upstream 439496 21419348 ~ 21424564 (+) False LOC110529590
TU779504 other upstream 439668 21419348 ~ 21424392 (+) False LOC110529590
TU780275 other downstream 60466 21925117 ~ 21926280 (+) False G685215
TU780277 other downstream 60466 21925117 ~ 21926356 (+) False G685215
TU780265 other downstream 60633 21925284 ~ 21926229 (+) False G685215
TU780379 other downstream 219223 22083874 ~ 22084224 (+) True G685311
TU780597 other downstream 558407 22423058 ~ 22433035 (+) True LOC110529616

Expression Profile