RNA id: TU780262


Basic Information

Item Value
RNA id TU780262
length 252
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G685212
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 21913573 ~ 21913824 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTTTATAACGATGGTTGACCGTTGCTCTCTGTCTGTGAGAAGATACAGTAACAGGGTAACTATCTGAGGGTCCACCAGTGTTGATCACATGACTTGTCTACGGAGCCTTGACCTGATAAGAAAACACTTACATAGCCATATTGTGCAATAGCTCTCTACTTCACCTAAACTGCAAATTCCAGAAGCTTTGCTTCTTAGTTTTCAGTATGAGATAATAACAATGTTACCTTCAGCTgtacatataaactcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU780240 lncRNA upstream 1079 21905151 ~ 21912494 (+) False LOC110529604
TU780243 lncRNA upstream 1079 21905151 ~ 21912494 (+) True LOC110529604
TU780226 lncRNA upstream 48922 21864060 ~ 21864651 (+) True G685183
TU780202 lncRNA upstream 88288 21824969 ~ 21825285 (+) True G685164
TU780201 lncRNA upstream 88800 21824556 ~ 21824773 (+) True G685163
TU780268 lncRNA downstream 12112 21925936 ~ 21926280 (+) True G685215
TU780437 lncRNA downstream 246799 22160623 ~ 22161261 (+) True G685365
TU780494 lncRNA downstream 318799 22232623 ~ 22232848 (+) True G685415
TU780583 lncRNA downstream 439708 22353532 ~ 22354430 (+) True G685495
TU780556 lncRNA downstream 487675 22401499 ~ 22402717 (+) True LOC110529613
XR_002474422.2 mRNA upstream 2144 21905011 ~ 21911429 (+) False LOC110529604
XR_005052833.1 mRNA upstream 2144 21905011 ~ 21911429 (+) False LOC110529604
XM_021611954.2 mRNA upstream 33985 21876894 ~ 21879588 (+) True LOC110529601
XM_021611953.2 mRNA upstream 36829 21874399 ~ 21876744 (+) True LOC110529600
XM_021611950.2 mRNA upstream 96883 21789216 ~ 21816690 (+) True LOC110529597
XM_021611961.2 mRNA downstream 13186 21927010 ~ 21929650 (+) True LOC110529606
XM_036985033.1 mRNA downstream 17218 21931042 ~ 21955312 (+) False LOC110529607
XM_036985036.1 mRNA downstream 17218 21931042 ~ 21955451 (+) False LOC110529607
XM_036985035.1 mRNA downstream 17218 21931042 ~ 21955454 (+) False LOC110529607
XM_036985031.1 mRNA downstream 17218 21931042 ~ 21958665 (+) False LOC110529607
TU779524 other upstream 489009 21419348 ~ 21424564 (+) False LOC110529590
TU779525 other upstream 489009 21419348 ~ 21424564 (+) False LOC110529590
TU779504 other upstream 489181 21419348 ~ 21424392 (+) False LOC110529590
TU780275 other downstream 11293 21925117 ~ 21926280 (+) False G685215
TU780277 other downstream 11293 21925117 ~ 21926356 (+) False G685215
TU780265 other downstream 11460 21925284 ~ 21926229 (+) False G685215
TU780379 other downstream 170050 22083874 ~ 22084224 (+) True G685311
TU780597 other downstream 509234 22423058 ~ 22433035 (+) True LOC110529616

Expression Profile