RNA id: TU781317



Basic Information


Item Value
RNA id TU781317
length 273
lncRNA type intronic
GC content 0.47
exon number 1
gene id G686143
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 22504662 ~ 22504934 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


attatAGAGTTGGTGCtgactttgctgctataacagcctccactcttctgggaaggctttccattagatgttggaacattgctgagggcacttgcttcaattcagccacaagcattagtgaggtcgggcactgatgttgtcattgtatgctgtagcgttaagatttcccttcactggaactaaggggcctagcccgaaccatcaaaaacagccccagaccattattcctccctcaccaaaaatgtacagttggcactatgcattgagacaggt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU781313 lncRNA downstream 3193 22501233 ~ 22501469 (-) True G686139
TU781312 lncRNA downstream 5155 22499183 ~ 22499507 (-) True G686138
TU781280 lncRNA downstream 94828 22406265 ~ 22409834 (-) True G686106
TU781260 lncRNA downstream 110913 22382114 ~ 22393749 (-) True G686090
TU781242 lncRNA downstream 150379 22353600 ~ 22354283 (-) True G686073
TU781336 lncRNA upstream 19926 22524860 ~ 22525069 (-) True G686153
TU781469 lncRNA upstream 194228 22699162 ~ 22699380 (-) True G686277
TU781485 lncRNA upstream 206824 22711758 ~ 22712024 (-) True G686293
TU781487 lncRNA upstream 208233 22713167 ~ 22713476 (-) True G686295
TU781489 lncRNA upstream 208701 22713635 ~ 22713904 (-) True G686297
XM_036985042.1 mRNA downstream 8244 22481780 ~ 22496418 (-) False LOC110529618
XM_021611977.2 mRNA downstream 8300 22481780 ~ 22496362 (-) False LOC110529618
XM_021611974.2 mRNA downstream 8300 22481781 ~ 22496362 (-) False LOC110529618
XM_021611975.2 mRNA downstream 8300 22481781 ~ 22496362 (-) True LOC110529618
XM_021611973.2 mRNA downstream 45078 22446715 ~ 22459584 (-) True LOC110529617
XM_021611980.2 mRNA upstream 28222 22533156 ~ 22562329 (-) False txlnba
XM_036985045.1 mRNA upstream 28222 22533156 ~ 22562329 (-) True txlnba
XM_021611981.2 mRNA upstream 70186 22575120 ~ 22577512 (-) True cited2
XM_021611982.2 mRNA upstream 284928 22789862 ~ 22803661 (-) True nmbr
XM_021611987.2 mRNA upstream 424757 22929691 ~ 22950071 (-) False si:ch211-202p1.5
TU781111 other downstream 343620 22159030 ~ 22161042 (-) False G685953
TU780899 other downstream 579754 21920427 ~ 21924908 (-) False LOC110529207
TU780900 other downstream 579754 21920427 ~ 21924908 (-) True LOC110529207
TU779858 other downstream 1025459 21478766 ~ 21479203 (-) True G684844
TU776244 other downstream 3712525 18791230 ~ 18792137 (-) True G681659
TU783285 other upstream 1111973 23616907 ~ 23621246 (-) True LOC110529643
TU783300 other upstream 1130375 23635309 ~ 23637408 (-) True G687890
TU783403 other upstream 1249898 23754832 ~ 23756910 (-) True G687979
TU783552 other upstream 1483165 23988099 ~ 23988854 (-) True G688109
TU783833 other upstream 1920129 24425063 ~ 24425553 (-) False G688366

Expression Profile