RNA id: TU781484



Basic Information


Item Value
RNA id TU781484
length 214
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G686292
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 22710743 ~ 22710956 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTATTTGTAGGGTTCAATTTAAGtgcatgttgtgattttttttaaccattcctgtaaccagaaacaagctacataggagcaataccagaataaatgatctagtgattctgtctcttcgcagctgagattgttgtatgccccaTATACTGCATAtagcattctgttggtggcaagaataaTTTCAATTAAAAAACTTGAAGTGTTGAATCAAGTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU781443 lncRNA upstream 24696 22685799 ~ 22686047 (+) True G686253
TU780718 lncRNA upstream 133255 22575120 ~ 22577488 (+) True G685610
TU780672 lncRNA upstream 196378 22514061 ~ 22514365 (+) True G685575
TU780657 lncRNA upstream 244844 22465698 ~ 22465899 (+) True G685562
TU780633 lncRNA upstream 269535 22440998 ~ 22441208 (+) True G685539
TU781488 lncRNA downstream 2570 22713526 ~ 22713788 (+) True G686296
TU781490 lncRNA downstream 3564 22714520 ~ 22714864 (+) True G686298
TU781500 lncRNA downstream 11778 22722734 ~ 22723015 (+) True G686308
TU781526 lncRNA downstream 31899 22742855 ~ 22743056 (+) True G686334
TU781577 lncRNA downstream 87233 22798189 ~ 22799685 (+) True G686378
XM_021611978.2 mRNA upstream 198714 22506844 ~ 22512029 (+) False LOC110529619
XM_021611979.2 mRNA upstream 198714 22506845 ~ 22512029 (+) False LOC110529619
XM_036985043.1 mRNA upstream 198714 22507290 ~ 22512029 (+) False LOC110529619
XM_036985044.1 mRNA upstream 198714 22507290 ~ 22512029 (+) True LOC110529619
XM_021614353.2 mRNA upstream 204381 22503872 ~ 22506362 (+) True LOC110531077
XM_021611983.2 mRNA downstream 93948 22804904 ~ 22809549 (+) False gje1
XM_036985052.1 mRNA downstream 94800 22805756 ~ 22809549 (+) False gje1
XM_021611984.2 mRNA downstream 94816 22805772 ~ 22809548 (+) True gje1
XM_021611986.2 mRNA downstream 98926 22809882 ~ 22857289 (+) True vta1
XM_036985050.1 mRNA downstream 149058 22860014 ~ 22913425 (+) False adgrg6
TU780646 other upstream 228604 22480323 ~ 22482139 (+) True G685551
TU780557 other upstream 262670 22446771 ~ 22448073 (+) True G685469
TU780597 other upstream 277708 22423058 ~ 22433035 (+) True LOC110529616
TU780379 other upstream 626519 22083874 ~ 22084224 (+) True G685311
TU780265 other upstream 784514 21925284 ~ 21926229 (+) False G685215
TU781664 other downstream 235545 22946501 ~ 22972836 (+) False G686448
TU781666 other downstream 239226 22950182 ~ 22972836 (+) False G686448
TU781994 other downstream 773476 23484432 ~ 23524035 (+) True LOC110529640
TU782829 other downstream 1273489 23984445 ~ 23990999 (+) False LOC110529210
TU782837 other downstream 1273489 23984445 ~ 23990999 (+) False LOC110529210

Expression Profile