RNA id: TU781487



Basic Information


Item Value
RNA id TU781487
length 310
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G686295
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 22713167 ~ 22713476 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gttttaaatatccaataaatgtcgttccacttcatgattgtgtctcacttgttgttgattcttcacaaaaaaatacagttttacatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtatctatctattttattttaaagtttctactccgctagccagcacctcgtcatACTAGGTGTGCGTTTATTTTTCTTCTAGAgcttgagatatctgccagggaCGCAGAGATGTGTTTCGCCACCTGGGTATTAAAATGggagaaggaga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU781485 lncRNA downstream 1143 22711758 ~ 22712024 (-) True G686293
TU781469 lncRNA downstream 13787 22699162 ~ 22699380 (-) True G686277
TU781336 lncRNA downstream 188098 22524860 ~ 22525069 (-) True G686153
TU781317 lncRNA downstream 208233 22504662 ~ 22504934 (-) True G686143
TU781313 lncRNA downstream 211698 22501233 ~ 22501469 (-) True G686139
TU781489 lncRNA upstream 159 22713635 ~ 22713904 (-) True G686297
TU781506 lncRNA upstream 13457 22726933 ~ 22727238 (-) True G686314
TU782137 lncRNA upstream 142413 22855889 ~ 22858714 (-) True G686858
TU782170 lncRNA upstream 190946 22904422 ~ 22904940 (-) True G686891
TU782178 lncRNA upstream 199815 22913291 ~ 22915624 (-) False G686899
XM_021611981.2 mRNA downstream 135655 22575120 ~ 22577512 (-) True cited2
XM_021611980.2 mRNA downstream 150838 22533156 ~ 22562329 (-) False txlnba
XM_036985045.1 mRNA downstream 150838 22533156 ~ 22562329 (-) True txlnba
XM_021611974.2 mRNA downstream 216805 22481781 ~ 22496362 (-) False LOC110529618
XM_021611982.2 mRNA upstream 76386 22789862 ~ 22803661 (-) True nmbr
XM_021611987.2 mRNA upstream 216215 22929691 ~ 22950071 (-) False si:ch211-202p1.5
XM_021611991.2 mRNA upstream 256613 22970089 ~ 23024439 (-) False hivep2a
XM_021611990.2 mRNA upstream 256613 22970089 ~ 23060383 (-) False hivep2a
XM_021611988.2 mRNA upstream 256613 22970089 ~ 23066912 (-) False hivep2a
TU781111 other downstream 552125 22159030 ~ 22161042 (-) False G685953
TU780899 other downstream 788259 21920427 ~ 21924908 (-) False LOC110529207
TU780900 other downstream 788259 21920427 ~ 21924908 (-) True LOC110529207
TU779858 other downstream 1233964 21478766 ~ 21479203 (-) True G684844
TU776244 other downstream 3921030 18791230 ~ 18792137 (-) True G681659
TU783285 other upstream 903431 23616907 ~ 23621246 (-) True LOC110529643
TU783300 other upstream 921833 23635309 ~ 23637408 (-) True G687890
TU783403 other upstream 1041356 23754832 ~ 23756910 (-) True G687979
TU783552 other upstream 1274623 23988099 ~ 23988854 (-) True G688109
TU783833 other upstream 1711587 24425063 ~ 24425553 (-) False G688366

Expression Profile