RNA id: TU781526



Basic Information


Item Value
RNA id TU781526
length 202
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G686334
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 22742855 ~ 22743056 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCATTAATTGGTATTCAGTAAGAAACATGCTCATACGCCACCTTGGAAGATGCTTCCTCTTGCCTGATGTGAGCTTTATTGACAAATGCATTCAGCGTGTCACTCAGGGACTCAAGTACCTTCACAATGGGAATGCCAATAATGAATACTTCAATGCTGTCTTTTAAACAAAAGgtgacctgcctaaattactatcACATAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU781500 lncRNA upstream 19840 22722734 ~ 22723015 (+) True G686308
TU781490 lncRNA upstream 27991 22714520 ~ 22714864 (+) True G686298
TU781488 lncRNA upstream 29067 22713526 ~ 22713788 (+) True G686296
TU781484 lncRNA upstream 31899 22710743 ~ 22710956 (+) True G686292
TU781443 lncRNA upstream 56808 22685799 ~ 22686047 (+) True G686253
TU781577 lncRNA downstream 55133 22798189 ~ 22799685 (+) True G686378
TU781615 lncRNA downstream 96500 22839556 ~ 22910729 (+) True G686406
TU781623 lncRNA downstream 171297 22914353 ~ 22915608 (+) True adgrg6
TU781642 lncRNA downstream 180224 22923280 ~ 22923520 (+) True G686432
TU781648 lncRNA downstream 187697 22930753 ~ 22931260 (+) True G686438
XM_021611978.2 mRNA upstream 230826 22506844 ~ 22512029 (+) False LOC110529619
XM_021611979.2 mRNA upstream 230826 22506845 ~ 22512029 (+) False LOC110529619
XM_036985043.1 mRNA upstream 230826 22507290 ~ 22512029 (+) False LOC110529619
XM_036985044.1 mRNA upstream 230826 22507290 ~ 22512029 (+) True LOC110529619
XM_021614353.2 mRNA upstream 236493 22503872 ~ 22506362 (+) True LOC110531077
XM_021611983.2 mRNA downstream 61848 22804904 ~ 22809549 (+) False gje1
XM_036985052.1 mRNA downstream 62700 22805756 ~ 22809549 (+) False gje1
XM_021611984.2 mRNA downstream 62716 22805772 ~ 22809548 (+) True gje1
XM_021611986.2 mRNA downstream 66826 22809882 ~ 22857289 (+) True vta1
XM_036985050.1 mRNA downstream 116958 22860014 ~ 22913425 (+) False adgrg6
TU780646 other upstream 260716 22480323 ~ 22482139 (+) True G685551
TU780557 other upstream 294782 22446771 ~ 22448073 (+) True G685469
TU780597 other upstream 309820 22423058 ~ 22433035 (+) True LOC110529616
TU780379 other upstream 658631 22083874 ~ 22084224 (+) True G685311
TU780265 other upstream 816626 21925284 ~ 21926229 (+) False G685215
TU781664 other downstream 203445 22946501 ~ 22972836 (+) False G686448
TU781666 other downstream 207126 22950182 ~ 22972836 (+) False G686448
TU781994 other downstream 741376 23484432 ~ 23524035 (+) True LOC110529640
TU782829 other downstream 1241389 23984445 ~ 23990999 (+) False LOC110529210
TU782837 other downstream 1241389 23984445 ~ 23990999 (+) False LOC110529210

Expression Profile