RNA id: TU781666


Basic Information

Item Value
RNA id TU781666
length 2190
RNA type TUCP
GC content 0.44
exon number 2
gene id G686448
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 22946501 ~ 22972836 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgcgtgtgcgtgtgcgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgcgtgcatgcgtctgtgtatgtgtgtgtgtgtatacaaatTCATGGGCATTCAATATTTACATCAGCTGGAATGTTCCCCATACTAATCAATAAATCAAGTACTTCAAGCAACGTGATTCACAGAAGATCAAACTATCTTTAATATTTCACTACTACTTCAGTAAGCGTTGAatgaaaacaaaaaataaaagcacATTGATTCACTTAATGCTGAACAGTTCTACtttttgtaaaaaatgtaaaatcacAACTAGTGTAGCCAATCCAGCGAACAGGAGAGAAAAAGGTCCAAGCATTTAGAACTAACTACCATACTGTATGTGGGTGTCAATCTAAAACCTAAgtgcacatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatttatatactatatatatatatatttatatactagATATATATTCTGGTAAATtgtatcatatgtatatacctcCAAGTAAAGTGCATTCACTTAGGTGTATATAAATACTTCTAACATATAAAGCCATTTTACAGTGTACATATTGTTTGCTCTAATTATGCCATAGCAAAACCCATGCTTTACATAGAAAAGGCATCCACAACATTaagaaaaatgtacattttatgaAACATGATACAATAAATAGTATTATAGAATTGCTGCTGTACACAAAAGCCATTTCATTTCACTCatataaaaatatgttttagtgCAACCTTACATATATTGATACTTCACATCATTCAGACTCAAGTGTCTAAAAAAGACGAGAAATTGCATTTATTACAAAGCTGATACACAAACGTGATATATTAACATATCTTCCTGCTTAATATGCTTATAAGAATATAAGCAACAAGTAAAGAAAAGGCACACACATCTGTACATTTAAAAGTACCAGACTGGAGTCCATCATCAATTTGGTCAGGCTCATATATAagttaacatactgtatgtatattctCTGAAAATTTAAATAAGAAAGAAATTGTTAAAATAGCAAACCAGGTTATAAAAGGCATGCTATACATTTAAACTACAGAGTATCTACTTAATTTGCTTGTTTAAagacttgtttgtgtgtgtgtgtgtgtgtttaaatgtctgtctctctgtgtgcgcgtcgtgtgtgtgtgtgcaattgtACGGGTTGATGTCTTTGCGTTGCACGTCCTTCCCTTTTTAACAATGTTCACCTGTTCTCGGTGGCATCCTTTAATATATTTTTGCCTCTCTTTGTGCTTTCTGGTCTTTCCCCAGGGCTTTGTTGACCTGGCGACCTCTCCTTGGCACAGTGGCCTGGGCCTGCCGTGGAACCCGCCGGGCCCTTTGATGTGGCTGGCAGGGAGGTCTCCGAGCTGGAGCTGGAgtgtagggggagaggggaggcagagtgGCCGTCCGGGGACTGCCTAACCTCTAGGCCACTAAAGTGCTGAATGATGCTGGAGCTTCTCTCCTGAGGGCTGGggtaaggggagtgagaggaGTGAGGCAGTGGGGAGGGGTGTCTCTGATGGGCGTCTGAAGAGCACACCAACATGCCCTTCTCCAGAGTGTCGTGTTCTGTAGCGATGCGGAGCGAGGCGATAGCATTGGTACAAGTCTGTATGCTTTCCTCCTGCTGCTTAATGTCCTTGCTGTCTGACATGTCTGCGCTGTCCTGGCGACTTCCTGACCAGGGTAAGGACGGGCCAGGGGAGGGGACCGGCGTCCCCCGAGAGGAAAAGGATGATGACACCATCCTCTCCTGGCGCTGGGGTGAGTCGGACGACCCGGTGGAACCCctggaccctcctcctccctcgACCAGGTGGAAGGAGACCTCGCTGGTGCTGGACTCCTCGGACGTGCTCTTCTGCAGGGGGAGGCGGGCGGGATGGGTCaggccggtgactgaggtgggcACGGAGTGCACCATCTGGATGCCGCCGATGGGGATCATGGGGAAGGAGGTGCGGACCTGTTGCTGGGAGTGCAGAGGGAGGTGGCTGAACAGGCCCTGGTGGGGCAGAGGGGACTCCTGGCTGCTGTGGGGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU781660 lncRNA upstream 6728 22943126 ~ 22943454 (+) True G686447
TU781659 lncRNA upstream 9672 22940250 ~ 22940510 (+) True G686446
TU781657 lncRNA upstream 12810 22937172 ~ 22937372 (+) True G686444
TU781648 lncRNA upstream 18922 22930753 ~ 22931260 (+) True G686438
TU781642 lncRNA upstream 26662 22923280 ~ 22923520 (+) True G686432
TU781785 lncRNA downstream 173654 23146490 ~ 23147721 (+) False G686555
TU781786 lncRNA downstream 173727 23146563 ~ 23147721 (+) True G686555
TU781787 lncRNA downstream 187070 23159906 ~ 23160262 (+) True G686556
TU781788 lncRNA downstream 188477 23161313 ~ 23161518 (+) True G686557
TU781789 lncRNA downstream 188728 23161564 ~ 23162164 (+) True G686558
XM_036985046.1 mRNA upstream 34528 22860019 ~ 22915654 (+) False adgrg6
XM_021611994.2 mRNA downstream 103548 23076384 ~ 23144537 (+) True aig1
XM_021611992.2 mRNA downstream 178445 23151281 ~ 23155668 (+) True pex3
XM_021612001.2 mRNA downstream 204802 23177638 ~ 23181382 (+) True atf3
XM_021612003.2 mRNA downstream 229408 23202244 ~ 23207956 (+) False tatdn3
XM_021612004.2 mRNA downstream 229408 23202244 ~ 23207956 (+) False tatdn3
TU780646 other upstream 468043 22480323 ~ 22482139 (+) True G685551
TU780557 other upstream 502109 22446771 ~ 22448073 (+) True G685469
TU780597 other upstream 517147 22423058 ~ 22433035 (+) True LOC110529616
TU780379 other upstream 865958 22083874 ~ 22084224 (+) True G685311
TU780265 other upstream 1023953 21925284 ~ 21926229 (+) False G685215
TU781994 other downstream 511596 23484432 ~ 23524035 (+) True LOC110529640
TU782829 other downstream 1011609 23984445 ~ 23990999 (+) False LOC110529210
TU782837 other downstream 1011609 23984445 ~ 23990999 (+) False LOC110529210
TU784088 other downstream 2009893 24982729 ~ 24984826 (+) True G688613
TU784318 other downstream 2086117 25058953 ~ 25061450 (+) True G688823

Expression Profile