RNA id: TU782335



Basic Information


Item Value
RNA id TU782335
length 346
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G687034
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 23173971 ~ 23174316 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGATCAAGATGGGTTGTATAATGAAGCATCTACCCCATTGTACAAAATCTACTGTCATATTACTTAGCTATAGTCTCAAGGAAATGTAATTTAGCTCTTATGGAAAAAGTGATGTAACAGTGATATATGGACACGATAACAGGAACATTATTCGTCATTACTCTATGGTATCTTTGTTTGATTCCACAACAAGGTTAAACTGATAAGAAACTCCAACCATGCTACTGAGACTGTGAACTTCTATAGGGATCACTGCTTTCATTTCTCAGTTAGAAAATATTTCAGTTGTCGGCACAGCTGCGTTTTAGTTTTTTAAGCTAGTAAAACGTTTTACTTCCAGTATATT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU782332 lncRNA downstream 8846 23164770 ~ 23165125 (-) True G687031
TU782312 lncRNA downstream 16362 23157198 ~ 23157609 (-) True G687017
TU782311 lncRNA downstream 16872 23156889 ~ 23157099 (-) True G687016
TU782295 lncRNA downstream 29546 23142386 ~ 23144425 (-) True G687007
TU782236 lncRNA downstream 144465 23028240 ~ 23029506 (-) True G686951
TU782342 lncRNA upstream 11842 23186158 ~ 23186391 (-) True G687041
TU782345 lncRNA upstream 14699 23189015 ~ 23189218 (-) True G687044
TU782325 lncRNA upstream 33556 23207872 ~ 23208815 (-) True G687024
TU782390 lncRNA upstream 71240 23245556 ~ 23249740 (-) True G687075
TU782330 lncRNA upstream 101504 23275820 ~ 23277349 (-) True G687029
XM_021611995.2 mRNA downstream 22722 23146458 ~ 23151249 (-) False adat2
XM_021614354.2 mRNA upstream 18248 23192564 ~ 23198250 (-) True batf3
XM_021612008.2 mRNA upstream 25195 23199511 ~ 23202223 (-) False nsl1
XM_021612009.2 mRNA upstream 25614 23199930 ~ 23202233 (-) True nsl1
XM_021612016.2 mRNA upstream 79271 23253587 ~ 23258467 (-) False angel2
XM_036985053.1 mRNA upstream 79271 23253587 ~ 23258468 (-) False angel2
TU781111 other downstream 1012929 22159030 ~ 22161042 (-) False G685953
TU780899 other downstream 1249063 21920427 ~ 21924908 (-) False LOC110529207
TU780900 other downstream 1249063 21920427 ~ 21924908 (-) True LOC110529207
TU779858 other downstream 1694768 21478766 ~ 21479203 (-) True G684844
TU776244 other downstream 4381834 18791230 ~ 18792137 (-) True G681659
TU783285 other upstream 442591 23616907 ~ 23621246 (-) True LOC110529643
TU783300 other upstream 460993 23635309 ~ 23637408 (-) True G687890
TU783403 other upstream 580516 23754832 ~ 23756910 (-) True G687979
TU783552 other upstream 813783 23988099 ~ 23988854 (-) True G688109
TU783833 other upstream 1250747 24425063 ~ 24425553 (-) False G688366

Expression Profile