RNA id: TU782390


Basic Information

Item Value
RNA id TU782390
length 3844
lncRNA type antisense_over
GC content 0.41
exon number 4
gene id G687075
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 23245556 ~ 23249740 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAACCATTGTCAACTGATCAGTGTAACAGTAGGAGTTGGGAGGACATTATCTTCCACCAGCggtcaaaatacaaaaatcaccCTGTCATCATCATACATGGAGAAAACCAGGGGCGGATTCTAAAGTCTCATTTCAATAGAATAGTGGTGCTGTAAGAAATGCTACCATTTGTTCTGCTATTGATCTTCCATCAGTACTTTTCCTTTTCAGCCAATGGGACAAATAGATCAGCCCTTTCCAGAAAGATATGAGAATAATACCAGCCAACTGGCAGCACCAGTGGCATGAGTATAAAAAAGAACACTCTTAACACCCAGAGTCCTAGTACATTCCCATTTACGAGAAGAGGCCAAGAGTCCTAGTACACTCCCATTTACGAGAAGAGGCCAAGAGAACACTCCTCATGAAACGTACCTTAATACAGGAAAAGCAGTCTCATCTAAAACGCTGAATTGCAGTGACTCAAAGGTAGAGTTCCACAGTCCACATCATGCTTTGAAAACACCTAAATATTCAGTAACACTTAGTCCCAACAGCACATCATTGCCTTTCAAGTTATCAACCACTAAATGCAGAAGGTGGTGGTATATTATAGTGGTGGTAGCTGGTTTAGGTTACTCATATTGTGCAGTTATTCAGATAacttgtttttcttttctttttttttttaaaacaccatTTGGTAAATACAAAATGGATAAAAGAAATCCACAGTCATGAGTGGTACTGTTTTTCTTTAACCATTATCCCATTGGATGGTACTTCATTTTTCAAGCCTATTCAGTGGTCAAACAGTACAAACATAGCAAGACCTTTGAAAAATGATACTGCTACAATGTGGTGTGCTTCTTTAAAAATCACACCTCGTCCAAagaatatcatcatcatcatcatcatcatcatcacaacaaaGTGTTTTCACCACGTCATAAAAACAACAACCAGCACGATTAAACACTGCACTCAGTAACAGATTTGTTCAAGAAACAGCGAATAATCACCAATAGAACTCAGCCACAACACAATTTAGCTCAACACTAAACAGTTAAGAGCACAACTCTAATTTAGCTACATCACTTAAGAGTATTATCTTTCAGTTCCCAGATTTGCAGCAGTGAAAGCAGTCTTTCCTCCCAGTAAGGGTTCTAATCAATCTGGAAAGCTGAAGAGTTAGATATGCAGTGGGTATGGTAAATGCAGTCTCCACTAAAGCTGACATTGCCTTCAAATTTCAGTCacgctgtaaagctgaacttccgcaatgcatattGAAAAGAGTGTTTAACAGTAAGTGTTTAACAGTAAGAATGTTAAACCTAGCCTGTATAGATTTGACAAACAATTGTATTGTGTAAAAGTGAAGCACATTCTGCTTCTATAGAGGATTGTAAAACCAAAgtcatacactacatggccaaaagtatgtggacacctgctcgtcatcTCATTCCGAAATCACGGCGATTACTatgaagttggtccccctttgttgctataacagcctccactcttctgggaacgcTTTCCgtcagatgttggaacattgctgtggggacttgcttccattcagccacaagagcattagtgaggtcggcactgatgttgggcgattaggcctggctcgcagtcggcgttccaattcatccacaaggtgtttgatggggttgaggtcagggctctgtgtaggccagttacgttcttccacaccgacaatccatttctgtatggacctcgctttgtgctttgccatgctgaaacaggaaaggggcttccccaaactgttgccacaaagttggaagcacagaatcgtctagaatgtcattgtatactgtatgccttttccagagtcagtttggaactcggtagtgagtgttgcaaccgaggacagacggttTTCacgtgctacgcgcttcagcacatttccacttcccaataacagcacttacagttgaccggggcagcactAGCACGGCAGAAATTTGATAAActgtcttgttggaaaggtggcatcctatgacagtgccacattgaagtcactgagctcttcagtattggtcattctactgccaatgtttgtctatggagattgcttggccgtgtgctcgattttatacacctgtcagcaacgggtgtgactgaaacAGCCGAATTCACCAATAcatatacttttggccatgtataTTAAGCTGGTTATTTTGTGCTTATAGTCTTTCAGACGGCTGGTGCCAATAGTGTTGGCCTTGATGGTATACTGTCAGACTAGCAGCACCATTCACAATTTGATCGTtagaataaaacattttaattagAAACATAAGAACTGATATGTTCTCAGCTCGTTCAGGATTCAAGAAAATGAGACTGGATTTCAATTCTGCTGCAATCTCGAAACTATTTAGATTGAGGAAGACATACAATGATTTATCATTTCCCTTTGATGTGCATAGCTTGTTTAACCAAAAGCTATAAAATGTTATATTGTTCAGTTGGCACCCTCCTGGATATCTGATGACTTTTGAATACTacaaaaaaaaatggaaacaATCTTCAACACCGCATCATGGCAGTTGAGATGGCATAGAAGCCTTGATTTGACTGATGTGTCTGTCTTGTGGTGTTCAGTTCAGTATTTGCATTCTTAACTTCAAGATTCTGTGATAGGATTCAGAAAGGCCTCAGGTTAGGAGCTACATAATATTATCAGACATGTTTTCGTATACGTCTGTATGCTGAGGTGTAACAGAGTTGACATTTTGAAGCAACACGTCACGGTCAAATTCTCTTGGGATTAAAAAGGTAATGTTCTGGCTAAGCTCCAAAGCATCATTGTCACAAGCTTTGATTTCCTTAAAAGATTAATTGATCTGGgcctgAGGAGGgtctatagagacagagacaggggggaTAATCTAACCGAGAGTCAGTGTCAGGGCTGGGGTTTAGCAGAGTACTCAGCAGGCTCTCTGCTTGACTGCCCTGGTCTTTGgcccctctctgttcccctcaCCTAAAGCCTACAGTACCTCCTGTTTCCTCCAACTCTTCTCTCACCCTTTCACTTCCCACATCATCACACGGACTACAGCTCAGCCCAGCAGATAACTACTTAACATCCTCTACAGGCTTAGGCATTACAACAACCGTTCAGTCTATATATTAAttatattgaaaaaaaaaatagatgaTCAGTCACACTATTTGATCCTTTTTACATAATGTCAACATACTGTCGGCTATTTTTTTAACCCACAGATTCTGTTTTTAAAAACGAATCTTCACATTGTAGAAGTAAACGAAATGTGACTGTTGCTCTCCTACACAAAAGCACACAGGCTATACAAAAACTGATTTTTTTAAAAACGATGTAGAGAATCCAACATATGTACTTCTCTAAACGCATGAGAGGTCTTGATATGATGTCTTCATGCAATTTAGGCATCAGTCCTTCATTAAAAACATAATAGATATGTATGCAAATGTATAATGTGGCTAATGCATGTGTGGAGGTGTATAATGAAACACACCTCTTGTTCAGGCTTTTGTTCGTCTGGTCATGAAGGACAGGAAATATATACCTTTGATATATTCAATGTATTTGTTCCTACTGGATGTCAGCCTCCAGTTTAGCACTGAGCATAATGTCATCATCTTCCCCCTATAGAAGAGGCTGGCAAAACCCTATAAATACTTTAGAATTATGATATACACAATGTCAGGTGAACATATGTGAGGGAGGCGGACTGGGTGGTCAGAGTGGAGACCAGGAGAATGTAGTCCAGTTCCAAGGAGTCTCAGATGCGGATCTGGTAGCCGTCGGTCAAAGTGCTGAGTTCTGCAGGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU782325 lncRNA downstream 36741 23207872 ~ 23208815 (-) True G687024
TU782345 lncRNA downstream 56338 23189015 ~ 23189218 (-) True G687044
TU782342 lncRNA downstream 59165 23186158 ~ 23186391 (-) True G687041
TU782335 lncRNA downstream 71240 23173971 ~ 23174316 (-) True G687034
TU782332 lncRNA downstream 80431 23164770 ~ 23165125 (-) True G687031
TU782330 lncRNA upstream 26080 23275820 ~ 23277349 (-) True G687029
TU782438 lncRNA upstream 97461 23347201 ~ 23347874 (-) True G687121
TU782454 lncRNA upstream 118614 23368354 ~ 23369103 (-) True G687137
TU782452 lncRNA upstream 153561 23403301 ~ 23405523 (-) True G687135
TU782472 lncRNA upstream 171926 23421666 ~ 23422179 (-) True G687155
XM_021612009.2 mRNA downstream 43323 23199930 ~ 23202233 (-) True nsl1
XM_021612008.2 mRNA downstream 43333 23199511 ~ 23202223 (-) False nsl1
XM_021614354.2 mRNA downstream 47306 23192564 ~ 23198250 (-) True batf3
XM_021611998.2 mRNA downstream 94307 23146463 ~ 23151249 (-) False adat2
XM_021612016.2 mRNA upstream 3847 23253587 ~ 23258467 (-) False angel2
XM_036985053.1 mRNA upstream 3847 23253587 ~ 23258468 (-) False angel2
XM_036985054.1 mRNA upstream 3847 23253587 ~ 23259122 (-) True angel2
XM_021612019.2 mRNA upstream 10448 23260188 ~ 23365791 (-) True galnt14
XM_021612024.2 mRNA upstream 277890 23527630 ~ 23582982 (-) False LOC110529641
TU781111 other downstream 1084514 22159030 ~ 22161042 (-) False G685953
TU780899 other downstream 1320648 21920427 ~ 21924908 (-) False LOC110529207
TU780900 other downstream 1320648 21920427 ~ 21924908 (-) True LOC110529207
TU779858 other downstream 1766353 21478766 ~ 21479203 (-) True G684844
TU776244 other downstream 4453419 18791230 ~ 18792137 (-) True G681659
TU783285 other upstream 367167 23616907 ~ 23621246 (-) True LOC110529643
TU783300 other upstream 385569 23635309 ~ 23637408 (-) True G687890
TU783403 other upstream 505092 23754832 ~ 23756910 (-) True G687979
TU783552 other upstream 738359 23988099 ~ 23988854 (-) True G688109
TU783833 other upstream 1175323 24425063 ~ 24425553 (-) False G688366

Expression Profile