RNA id: TU781858


Basic Information

Item Value
RNA id TU781858
length 2082
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G686602
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 23252209 ~ 23254320 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATCTCCATGTACCCCAGAATTGAGTATGAAATTGACACAcagttgataaatgaggccccaagTGAGAAAGATACATTTTCTCTGATCATCTctccatgcttctacatctgcgtcGCTTGccgtttgggattttaggctgggtttctgtacagcactttgtgacatcgggtgatgtaaaaagggcttcataaatacatttgactgattgATTCTCTGTCCATCAGTGTGCCTTAATCTCTGAGAGGTACTGTTCACACAATCCCTggaactcattcaatgtaatgtGACATtattacagagagctgaacaggTACAGTGTGTCTTTAATTGCAGGTCTATTATTGTGTTACATGCAGTACAATAGCTGTGACGGACATAGCCCTCATTTTCAACACTAACATTATTTGATTTGAATCTCCTTTAGCTCAAAGGCTagtcttccaagagtccttaagaaatgtaaaaaaaaaacatccagaaatGTGAAAAACAAAAGCAAAGTAAAAGCACAAAGACCCACATTCCTATTACGAGTTACACCCCCCAGCCCGTGTGCATATATGAATTGAAATACAACATAGCATACAGTGTTACAATAACCTTAGACCGACTCTAGTTGTTCAAGATATTTTATGAATTAATCTCGTAAAACAACTATTTGGCAAGTTTTTAAAAACTTTCTGCCAAGGAGTTCCGGACTTCACTGCTCTGAAACTAAAAGCTATTTTGCCCTGCTCTAATTTGGGTTTTGGTGGTCTTGGTTCTGCTTCATGTGTTTACGTCTTTGACCATATCCATTTATATAGTGGTTGGTCTACCAGAGTGGTGAATTCCATGAAAAAGGCTCTTACATTACTCCAGACGACAGAGCAGTAGTTCATTTGACAATggatgattttatttatttaaccaggcaagtcagttaagaacaaattcttatttacaatgacggcctacaccgggccaaaccctaacaacgTGGGCCatttgtgcaccgccctatggtactcacaatcacggccggttgtgatacaggaatcgaaccagggtctgtagtgacgcctcaagcaccgagatgcagtgccttagaccgctgctccactcgggagcccgatGATAGCTTGTGAGATTTATTTGAGAATTTGCGCTGGCATATATTTTGCAATCCTTCTGAGATTACAGGAGGTGCCGATGATTTTGTTGCAGAGCTGTGAAATGTGTGATGACAAAGAGACTGTTGTCTAACAGTACACTTAACAGCCTAGTCTATAAAACCTCTTCTATGGTGTCCCGCCAGCTGCAAGGTAGTTTCTTCCTTCTcttcgtatatatatatatatatatatatatatttcCTTGGTAAGTACTTTGCATTCATTTTTGCTAATTATCAAACCCAATAGTACTTGCATGACATaattaagatatatatatatattttttttaaatgaatttatcaACATTTATAAAATCATTCAAATCTAAAAGTGTCTATTTTCATATCTTCAACCAATGTAAAAATAACACGAAAAAGTTAAAATGTGTAAACATCTTGATGCAGTAGCCTAGATCTACACACTAGAGTCAGGCCACTGCAAAGCTCCAAATTCATCAATAATGTCTTTGAAATTAAAGTTCAACATCTACcagtgtcagtgtttgtacctTTCCAACATTTCCTGGGGATATGAGATCTTGAGAGATGAGAGACAAAAGCCATGGTGAGCTTGTGTACAATTGGTGTTTGGCTGCTGGTGAGCGGTATGGATGGATTTATGGGTCTCCCCAGGTCTTTGACCCCCAGTTCTGTCCAAGGCGCTAACCCCTGAACCCTAACATCCAGCCTCAGGGGCAGAGGCGGAAGCAGGCTAGTATGGGCAGGTGGTCGGAGGAGTTGTGCTCATTGGGCAGCCCGTTGACGGCCTccaggtctgtctgtcccacCAGGGCCAGTCTGGCCAGCAGCTGCAGCCCATGTCTTGGCAATGGACCCTCTGGGAGGAAAACAGACATGGCTAAAGGGATACTTAGCATgatagcagatacccatagacttccagtcatcgcGCTAACACTAGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU781815 lncRNA upstream 2471 23239707 ~ 23249738 (+) True vash2
TU781800 lncRNA upstream 61162 23190807 ~ 23191047 (+) True G686569
TU781799 lncRNA upstream 62092 23189915 ~ 23190117 (+) True G686568
TU781791 lncRNA upstream 84561 23166086 ~ 23167648 (+) True G686560
TU781789 lncRNA upstream 90045 23161564 ~ 23162164 (+) True G686558
TU781934 lncRNA downstream 102243 23356563 ~ 23420985 (+) True G686675
TU781968 lncRNA downstream 156119 23410439 ~ 23415293 (+) True G686708
TU781984 lncRNA downstream 186698 23441018 ~ 23441270 (+) True G686724
TU781990 lncRNA downstream 191994 23446314 ~ 23446647 (+) True G686730
TU781991 lncRNA downstream 192795 23447115 ~ 23447417 (+) True G686731
XM_021612014.2 mRNA upstream 2423 23221529 ~ 23249786 (+) False vash2
XM_021612012.2 mRNA upstream 2423 23221530 ~ 23249786 (+) False vash2
XM_021612013.2 mRNA upstream 2423 23221530 ~ 23249786 (+) False vash2
XM_021612015.2 mRNA upstream 2423 23221530 ~ 23249786 (+) False vash2
XM_021612002.2 mRNA upstream 31398 23209228 ~ 23220811 (+) True flvcr1
XM_036985055.1 mRNA downstream 113989 23368309 ~ 23405523 (+) False LOC110529639
XM_036985056.1 mRNA downstream 113989 23368309 ~ 23405523 (+) False LOC110529639
XM_036985057.1 mRNA downstream 113991 23368311 ~ 23405523 (+) True LOC110529639
XM_021612022.2 mRNA downstream 230088 23484408 ~ 23492107 (+) False LOC110529640
XM_036985058.1 mRNA downstream 230088 23484408 ~ 23493113 (+) False LOC110529640
TU781664 other upstream 279373 22946501 ~ 22972836 (+) False G686448
TU781666 other upstream 279373 22950182 ~ 22972836 (+) False G686448
TU780646 other upstream 770070 22480323 ~ 22482139 (+) True G685551
TU780557 other upstream 804136 22446771 ~ 22448073 (+) True G685469
TU780597 other upstream 819174 22423058 ~ 22433035 (+) True LOC110529616
TU781994 other downstream 230112 23484432 ~ 23524035 (+) True LOC110529640
TU782829 other downstream 730125 23984445 ~ 23990999 (+) False LOC110529210
TU782837 other downstream 730125 23984445 ~ 23990999 (+) False LOC110529210
TU784088 other downstream 1728409 24982729 ~ 24984826 (+) True G688613
TU784318 other downstream 1804633 25058953 ~ 25061450 (+) True G688823

Expression Profile