RNA id: TU782454



Basic Information


Item Value
RNA id TU782454
length 330
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G687137
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 23368354 ~ 23369103 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTGGTCTTTCCAGTGGAATACTGCCCCACAAGGAGAACCATGGGTTTGTTGTCAAAGTCGGCATCCTCTAAGGCGGGCGAGTGGAACTCGTGGAATTTGTAGTGTTCCTCCAATGGCAACAATTTGGTTTTGTAGAGCTTCTTGAGGCCATCGCTGACTGTCTGAAAGACCTCAGGATCCTTCTTCCTCATTTGAATACTGAAGCGGTTGAAGCTTCAAAATACTGTCCTAAATAATAGACCTTTCTCGAGTCAAATGAAGAAACAACAAATGAGCTATAATAAAGCACTATTCCTACTGCTGCGTAGAATGTTGTGCGGCTTCCCCGGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU782438 lncRNA downstream 20480 23347201 ~ 23347874 (-) True G687121
TU782330 lncRNA downstream 91005 23275820 ~ 23277349 (-) True G687029
TU782390 lncRNA downstream 118614 23245556 ~ 23249740 (-) True G687075
TU782325 lncRNA downstream 159539 23207872 ~ 23208815 (-) True G687024
TU782345 lncRNA downstream 179136 23189015 ~ 23189218 (-) True G687044
TU782452 lncRNA upstream 34198 23403301 ~ 23405523 (-) True G687135
TU782472 lncRNA upstream 52563 23421666 ~ 23422179 (-) True G687155
TU782491 lncRNA upstream 81478 23450581 ~ 23450931 (-) True G687174
TU782501 lncRNA upstream 94442 23463545 ~ 23463755 (-) True G687184
TU782514 lncRNA upstream 112853 23481956 ~ 23482279 (-) True G687197
XM_021612019.2 mRNA downstream 2563 23260188 ~ 23365791 (-) True galnt14
XM_036985054.1 mRNA downstream 109232 23253587 ~ 23259122 (-) True angel2
XM_036985053.1 mRNA downstream 109886 23253587 ~ 23258468 (-) False angel2
XM_021612016.2 mRNA downstream 109887 23253587 ~ 23258467 (-) False angel2
XM_021612009.2 mRNA downstream 166121 23199930 ~ 23202233 (-) True nsl1
XM_021612024.2 mRNA upstream 158527 23527630 ~ 23582982 (-) False LOC110529641
XM_036985067.1 mRNA upstream 245835 23614938 ~ 23620558 (-) False LOC110529643
XM_021612028.2 mRNA upstream 245835 23614938 ~ 23621822 (-) False LOC110529643
XM_036985069.1 mRNA upstream 245835 23614938 ~ 23621882 (-) False LOC110529643
XM_021612026.2 mRNA upstream 245835 23614938 ~ 23621944 (-) False LOC110529643
TU781111 other downstream 1207312 22159030 ~ 22161042 (-) False G685953
TU780899 other downstream 1443446 21920427 ~ 21924908 (-) False LOC110529207
TU780900 other downstream 1443446 21920427 ~ 21924908 (-) True LOC110529207
TU779858 other downstream 1889151 21478766 ~ 21479203 (-) True G684844
TU776244 other downstream 4576217 18791230 ~ 18792137 (-) True G681659
TU783285 other upstream 247804 23616907 ~ 23621246 (-) True LOC110529643
TU783300 other upstream 266206 23635309 ~ 23637408 (-) True G687890
TU783403 other upstream 385729 23754832 ~ 23756910 (-) True G687979
TU783552 other upstream 618996 23988099 ~ 23988854 (-) True G688109
TU783833 other upstream 1055960 24425063 ~ 24425553 (-) False G688366

Expression Profile