RNA id: TU782452


Basic Information

Item Value
RNA id TU782452
length 2196
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G687135
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 23403301 ~ 23405523 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATGCTTGGCTCTGTCACCTTTATTAGTTGCAAGATCTACTCAATTTGATGAAGACAGGATACTTAGCGTACTATCAGCAGCAACAGATGAATACACAGCAGAAGAGAAGTAGAGCAAGTATCAGTCATATCAGTCAGGGAAAGAAACCTACCACTTGTGTACAGTGTGAGTGGAATAAACTCCCTTAGACACTGTACAGTATAGTCTATCAACATTTCAATTTCCCCTGGGAACTACTTTCAGATGAGTGTTCCCTCACTATGATCCCAATAATAACTGTCACTGTATTACTATAGCTACAAAATTAAACTTGCCCTGGACCTTTTCTACATACAATTCTCATGTATTTCTGACCTATTCCACCTTTCAGTTTCTGAATAATCAGGTACAAGAACACAGGGTATTTGGATTATGACTTCATAATATTTATGGTGGATAATATCCAGAAGTGGTCTCAACTACAACACTGGATATCATAGAATATAGAGCGTAGAACAGTCTCTATGATAGATATACACTGTATGCCGATAGAATATTGAACGTCAGAGTATAGCAAGACTATAACTATAGTATTTTTTGTGTGCTATTTATCGAGGGAAGCAATCGAAGATAATTGGATGTGAGTAGTGATTTGAAACCTTTGCTTTTTAATGGGTTATGCATCCAATGAGCACAGATGAACAAGGGAATATTtgtatgtatactgtactgtgtcCAATTGGAAACGCCAGAACAGGACATAAACATCATCTCCATTGTCAGTTCACCTCCTTATATCTATGGAAAGATTGaagtctctttctctcaacagtGATTAGAATTACATAAGTATGCTAAATAATAGATCAAATAGGAATTAAACATACAGACGTTTGACAAGGATACTAGTTACTAGAAGGCAATTTCAAACACTATACATTTAAAGGTCTACCAACTCTTCGATTTCCGATATCCCAGCTATACAGTTGTAACAGTCTCTTGGTCAGGCTATGAAGGGCCTGCATGTGTTAGGATGCTGCCTGTTCACAAAAAGAAAATATCATATGCCTACACTACCTACTTATAAAAAGGATTCCTGTCACTACATTTGACCGTTATTGTGTTTTAAAGTGATAACTAGAAGGATTATTAAGATTTAGTATTGATATTAGTTTATCCTTTTGAAACATGCCCATTTTCTGGGGAGATATGAAGCAGACTACAAAACAGgctcaaataaaatacaaatgaattacaaatcatttatgctgaagagaaacagacagtgtTCATGTATCCAATGATAATGCAGGTTATTGTGTCACAGATAGCACACTCTCAGTGGTGTATAACAATAGGGCATGTGGGCGGTGCAGAGTCCAATATCAGTTCCCTCGACTCTTAACTTTGAACCATGACCTTTACCGCCTTCAACCCAGTTCaagaaaaagtaaaaaaaataaatcagaCATCTCCCAGAAGACCAAACCAATCCCTTTGCTCCCACTAAGCATAAACACAAAGTTTCTGCTTTTCTTTGTTTCTTGTTGAAGCGTGGTTGTCCAACCTTGATACATTTACCTCCTTCCTcttacccactccctctcttcttccctcttactcactccctctcttgttCAGCGCCCTGAGGAGGTGAgcgtgcgggggggggggggggggggggggggggggctactcaGCAGTGATTTTCCTCTTGGAAGGGGGGATGAGATGACCGGGGAGGTCGGCGGGTAGCTCGTGCCCCTCCAGTTTGACTTTGATCAGGTGATTGGCCAGGGCAAACTCCTCGTCATCCAGCATCCCATCCTTATCGATGTCAGCCAGCTTCCAGATCTTTCCCAGCACCGTGTTGGGAAGCTTGGACTTCACCATCTCTTTCTTGGCGTTGGCACCAGTCACCTTCCCGTTGACCGGCGACAGCGTGTAGAAGATCTCATCGTACATGGGCTTGTCGCGGGCCACCACCCACTCTGCCTCATCGATACCCTCCCCGGCGCCCTCGCCATAGCCGTGGCCGAAGGGCCCGTTGAGGGTGCCGTCGAAGGCCCCTCCCTTCACCACCTGCTGGGGTCGGTTGGTCTCCTCCTGTCTGACCAGCACCATGAGACCGGCGATGTCGTGGGCCAGCATGTCGTCCACCGTGTCCAGCAGCTTTATCTTCAGGGGCTGGAACTTGTTCAGGTCGTGGGCATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU782454 lncRNA downstream 34198 23368354 ~ 23369103 (-) True G687137
TU782438 lncRNA downstream 55427 23347201 ~ 23347874 (-) True G687121
TU782330 lncRNA downstream 125952 23275820 ~ 23277349 (-) True G687029
TU782390 lncRNA downstream 153561 23245556 ~ 23249740 (-) True G687075
TU782325 lncRNA downstream 194486 23207872 ~ 23208815 (-) True G687024
TU782472 lncRNA upstream 16143 23421666 ~ 23422179 (-) True G687155
TU782491 lncRNA upstream 45058 23450581 ~ 23450931 (-) True G687174
TU782501 lncRNA upstream 58022 23463545 ~ 23463755 (-) True G687184
TU782514 lncRNA upstream 76433 23481956 ~ 23482279 (-) True G687197
TU782527 lncRNA upstream 114938 23520461 ~ 23524038 (-) True G687210
XM_021612019.2 mRNA downstream 37510 23260188 ~ 23365791 (-) True galnt14
XM_036985054.1 mRNA downstream 144179 23253587 ~ 23259122 (-) True angel2
XM_036985053.1 mRNA downstream 144833 23253587 ~ 23258468 (-) False angel2
XM_021612016.2 mRNA downstream 144834 23253587 ~ 23258467 (-) False angel2
XM_021612009.2 mRNA downstream 201068 23199930 ~ 23202233 (-) True nsl1
XM_021612024.2 mRNA upstream 122107 23527630 ~ 23582982 (-) False LOC110529641
XM_036985067.1 mRNA upstream 209415 23614938 ~ 23620558 (-) False LOC110529643
XM_021612028.2 mRNA upstream 209415 23614938 ~ 23621822 (-) False LOC110529643
XM_036985069.1 mRNA upstream 209415 23614938 ~ 23621882 (-) False LOC110529643
XM_021612026.2 mRNA upstream 209415 23614938 ~ 23621944 (-) False LOC110529643
TU781111 other downstream 1242259 22159030 ~ 22161042 (-) False G685953
TU780899 other downstream 1478393 21920427 ~ 21924908 (-) False LOC110529207
TU780900 other downstream 1478393 21920427 ~ 21924908 (-) True LOC110529207
TU779858 other downstream 1924098 21478766 ~ 21479203 (-) True G684844
TU776244 other downstream 4611164 18791230 ~ 18792137 (-) True G681659
TU783285 other upstream 211384 23616907 ~ 23621246 (-) True LOC110529643
TU783300 other upstream 229786 23635309 ~ 23637408 (-) True G687890
TU783403 other upstream 349309 23754832 ~ 23756910 (-) True G687979
TU783552 other upstream 582576 23988099 ~ 23988854 (-) True G688109
TU783833 other upstream 1019540 24425063 ~ 24425553 (-) False G688366

Expression Profile