RNA id: TU782554


Basic Information

Item Value
RNA id TU782554
length 218
lncRNA type intronic
GC content 0.38
exon number 1
gene id G687236
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 23549302 ~ 23549519 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ataataaggTGGTATCTATCCCAACAATGGGATTTCCATTGGCTTTTAGGGAACTGTAagcaacaaaaatgtaaatgtttaacCTTAACATGTGTACAGATAAACagcaatgacatttactctcacgggtgGTTAAAAATAACTATATGAAAGCCACGACCCTACTAAACTACGCCTCCAATCTCCTCCATatctcaataacccagcaccaataaccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU782553 lncRNA upstream 208 23548830 ~ 23549094 (+) True G687235
TU782552 lncRNA upstream 1561 23547539 ~ 23547741 (+) True G687234
TU782543 lncRNA upstream 2768 23533319 ~ 23546534 (+) True G687225
TU782542 lncRNA upstream 19417 23527716 ~ 23529885 (+) True G687224
TU781996 lncRNA upstream 26669 23508366 ~ 23522633 (+) True G686735
TU782555 lncRNA downstream 412 23549931 ~ 23550413 (+) True G687237
TU782571 lncRNA downstream 16611 23566130 ~ 23566364 (+) True G687252
TU782575 lncRNA downstream 20121 23569640 ~ 23569934 (+) True G687256
TU782580 lncRNA downstream 24896 23574415 ~ 23574615 (+) True G687261
TU782587 lncRNA downstream 32059 23581578 ~ 23581787 (+) True G687268
XM_036985059.1 mRNA upstream 28044 23484408 ~ 23521258 (+) False LOC110529640
XM_021612023.2 mRNA upstream 28045 23484408 ~ 23521257 (+) False LOC110529640
XM_036985058.1 mRNA upstream 56189 23484408 ~ 23493113 (+) False LOC110529640
XM_021612022.2 mRNA upstream 57195 23484408 ~ 23492107 (+) False LOC110529640
XM_036985057.1 mRNA upstream 143779 23368311 ~ 23405523 (+) True LOC110529639
XM_036985060.1 mRNA downstream 36201 23585720 ~ 23614904 (+) False LOC110529642
XM_036985063.1 mRNA downstream 36201 23585720 ~ 23614904 (+) False LOC110529642
XM_036985061.1 mRNA downstream 36224 23585743 ~ 23614904 (+) False LOC110529642
XM_036985062.1 mRNA downstream 39462 23588981 ~ 23614904 (+) True LOC110529642
XM_021612034.2 mRNA downstream 197877 23747396 ~ 23756935 (+) False znf512
TU781994 other upstream 25267 23484432 ~ 23524035 (+) True LOC110529640
TU781664 other upstream 576466 22946501 ~ 22972836 (+) False G686448
TU781666 other upstream 576466 22950182 ~ 22972836 (+) False G686448
TU780646 other upstream 1067163 22480323 ~ 22482139 (+) True G685551
TU780557 other upstream 1101229 22446771 ~ 22448073 (+) True G685469
TU782829 other downstream 434926 23984445 ~ 23990999 (+) False LOC110529210
TU782837 other downstream 434926 23984445 ~ 23990999 (+) False LOC110529210
TU784088 other downstream 1433210 24982729 ~ 24984826 (+) True G688613
TU784318 other downstream 1509434 25058953 ~ 25061450 (+) True G688823
TU784988 other downstream 2129133 25678652 ~ 25681727 (+) False LOC110529690

Expression Profile