RNA id: TU782555


Basic Information

Item Value
RNA id TU782555
length 483
lncRNA type intronic
GC content 0.49
exon number 1
gene id G687237
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 23549931 ~ 23550413 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggcattcaaatcctcaaaacgttctacagctgcaccattgagagcatcttgactggctgcatcaccacttggtatggcaactgcttggcatccgaccgcaaggcgctacagagggtagtgcatttggcccagttcatcactggggctgagctccttgccatccaggacctccgtaccaggcggtgtcagaggaaggccctaaaaattgtgaaagactccagccacccaagtcatagattgttctctcagctaccgcatggcaagcggcaagtctggaaccaacaggactctgaacagcttctacccccaagcaataagactgctaaacagtttaaatagttaaccaaatagctacccggactatctgcgtTGACCCTTTTCGCACtaacttttttgactcatcacataagctgctgctactgtttactatctgtcactttattctacctcaattacctcgtacccctgcacatcaagtCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU782554 lncRNA upstream 412 23549302 ~ 23549519 (+) True G687236
TU782553 lncRNA upstream 837 23548830 ~ 23549094 (+) True G687235
TU782552 lncRNA upstream 2190 23547539 ~ 23547741 (+) True G687234
TU782543 lncRNA upstream 3397 23533319 ~ 23546534 (+) True G687225
TU782542 lncRNA upstream 20046 23527716 ~ 23529885 (+) True G687224
TU782571 lncRNA downstream 15717 23566130 ~ 23566364 (+) True G687252
TU782575 lncRNA downstream 19227 23569640 ~ 23569934 (+) True G687256
TU782580 lncRNA downstream 24002 23574415 ~ 23574615 (+) True G687261
TU782587 lncRNA downstream 31165 23581578 ~ 23581787 (+) True G687268
TU782597 lncRNA downstream 58755 23609168 ~ 23609986 (+) True G687278
XM_036985059.1 mRNA upstream 28673 23484408 ~ 23521258 (+) False LOC110529640
XM_021612023.2 mRNA upstream 28674 23484408 ~ 23521257 (+) False LOC110529640
XM_036985058.1 mRNA upstream 56818 23484408 ~ 23493113 (+) False LOC110529640
XM_021612022.2 mRNA upstream 57824 23484408 ~ 23492107 (+) False LOC110529640
XM_036985057.1 mRNA upstream 144408 23368311 ~ 23405523 (+) True LOC110529639
XM_036985060.1 mRNA downstream 35307 23585720 ~ 23614904 (+) False LOC110529642
XM_036985063.1 mRNA downstream 35307 23585720 ~ 23614904 (+) False LOC110529642
XM_036985061.1 mRNA downstream 35330 23585743 ~ 23614904 (+) False LOC110529642
XM_036985062.1 mRNA downstream 38568 23588981 ~ 23614904 (+) True LOC110529642
XM_021612034.2 mRNA downstream 196983 23747396 ~ 23756935 (+) False znf512
TU781994 other upstream 25896 23484432 ~ 23524035 (+) True LOC110529640
TU781664 other upstream 577095 22946501 ~ 22972836 (+) False G686448
TU781666 other upstream 577095 22950182 ~ 22972836 (+) False G686448
TU780646 other upstream 1067792 22480323 ~ 22482139 (+) True G685551
TU780557 other upstream 1101858 22446771 ~ 22448073 (+) True G685469
TU782829 other downstream 434032 23984445 ~ 23990999 (+) False LOC110529210
TU782837 other downstream 434032 23984445 ~ 23990999 (+) False LOC110529210
TU784088 other downstream 1432316 24982729 ~ 24984826 (+) True G688613
TU784318 other downstream 1508540 25058953 ~ 25061450 (+) True G688823
TU784988 other downstream 2128239 25678652 ~ 25681727 (+) False LOC110529690

Expression Profile