RNA id: TU782575


Basic Information

Item Value
RNA id TU782575
length 295
lncRNA type intronic
GC content 0.35
exon number 1
gene id G687256
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 23569640 ~ 23569934 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgttagctGGATTCAGAGCTTGTGAAAATATACctagatccaagttggctaaacttgaaatataCATATTATCTGGCCACTCACTAGAAtgtgggcttgtgcttgagagattgttcATGAGACCGGTGTTCattttctataatgcctgctacattattagtgaatgtgcctTATGCACATGGTTCTGGTTACATTTGTGACAAAAAAAAGGCTTTTTTATAGACAAACctgaaagccagatcagtgattattgcaacaacaaaaaacaggtaCAACAATTTTGATAAAATAATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU782571 lncRNA upstream 3276 23566130 ~ 23566364 (+) True G687252
TU782555 lncRNA upstream 19227 23549931 ~ 23550413 (+) True G687237
TU782554 lncRNA upstream 20121 23549302 ~ 23549519 (+) True G687236
TU782553 lncRNA upstream 20546 23548830 ~ 23549094 (+) True G687235
TU782552 lncRNA upstream 21899 23547539 ~ 23547741 (+) True G687234
TU782580 lncRNA downstream 4481 23574415 ~ 23574615 (+) True G687261
TU782587 lncRNA downstream 11644 23581578 ~ 23581787 (+) True G687268
TU782597 lncRNA downstream 39234 23609168 ~ 23609986 (+) True G687278
TU782601 lncRNA downstream 68736 23638670 ~ 23639056 (+) True G687282
TU782593 lncRNA downstream 73401 23643335 ~ 23644653 (+) True G687274
XM_036985059.1 mRNA upstream 48382 23484408 ~ 23521258 (+) False LOC110529640
XM_021612023.2 mRNA upstream 48383 23484408 ~ 23521257 (+) False LOC110529640
XM_036985058.1 mRNA upstream 76527 23484408 ~ 23493113 (+) False LOC110529640
XM_021612022.2 mRNA upstream 77533 23484408 ~ 23492107 (+) False LOC110529640
XM_036985057.1 mRNA upstream 164117 23368311 ~ 23405523 (+) True LOC110529639
XM_036985060.1 mRNA downstream 15786 23585720 ~ 23614904 (+) False LOC110529642
XM_036985063.1 mRNA downstream 15786 23585720 ~ 23614904 (+) False LOC110529642
XM_036985061.1 mRNA downstream 15809 23585743 ~ 23614904 (+) False LOC110529642
XM_036985062.1 mRNA downstream 19047 23588981 ~ 23614904 (+) True LOC110529642
XM_021612034.2 mRNA downstream 177462 23747396 ~ 23756935 (+) False znf512
TU781994 other upstream 45605 23484432 ~ 23524035 (+) True LOC110529640
TU781664 other upstream 596804 22946501 ~ 22972836 (+) False G686448
TU781666 other upstream 596804 22950182 ~ 22972836 (+) False G686448
TU780646 other upstream 1087501 22480323 ~ 22482139 (+) True G685551
TU780557 other upstream 1121567 22446771 ~ 22448073 (+) True G685469
TU782829 other downstream 414511 23984445 ~ 23990999 (+) False LOC110529210
TU782837 other downstream 414511 23984445 ~ 23990999 (+) False LOC110529210
TU784088 other downstream 1412795 24982729 ~ 24984826 (+) True G688613
TU784318 other downstream 1489019 25058953 ~ 25061450 (+) True G688823
TU784988 other downstream 2108718 25678652 ~ 25681727 (+) False LOC110529690

Expression Profile