RNA id: TU782587


Basic Information

Item Value
RNA id TU782587
length 210
lncRNA type intronic
GC content 0.47
exon number 1
gene id G687268
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 23581578 ~ 23581787 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTCAGAGGCAAAGTGACACTTCCAGTATCTATGGAGGGAGTAGCGCCTGTGATGGTTCCCATGAACCGCCCATGCTGGTCAGCACTGACTAACTGAACTCCCTGGCTGTCTTTCTATGACCTGGCATTTCCATCGAAATTAGGGAAAAAATAGTAACGGAAAAAAACATGAGGATGTGCCAATCATGATAAGATACATCGGGTCCATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU782580 lncRNA upstream 6963 23574415 ~ 23574615 (+) True G687261
TU782575 lncRNA upstream 11644 23569640 ~ 23569934 (+) True G687256
TU782571 lncRNA upstream 15214 23566130 ~ 23566364 (+) True G687252
TU782555 lncRNA upstream 31165 23549931 ~ 23550413 (+) True G687237
TU782554 lncRNA upstream 32059 23549302 ~ 23549519 (+) True G687236
TU782597 lncRNA downstream 27381 23609168 ~ 23609986 (+) True G687278
TU782601 lncRNA downstream 56883 23638670 ~ 23639056 (+) True G687282
TU782593 lncRNA downstream 61548 23643335 ~ 23644653 (+) True G687274
TU782604 lncRNA downstream 76276 23658063 ~ 23659103 (+) True G687285
TU782609 lncRNA downstream 86804 23668591 ~ 23668899 (+) True G687290
XM_036985059.1 mRNA upstream 60320 23484408 ~ 23521258 (+) False LOC110529640
XM_021612023.2 mRNA upstream 60321 23484408 ~ 23521257 (+) False LOC110529640
XM_036985058.1 mRNA upstream 88465 23484408 ~ 23493113 (+) False LOC110529640
XM_021612022.2 mRNA upstream 89471 23484408 ~ 23492107 (+) False LOC110529640
XM_036985057.1 mRNA upstream 176055 23368311 ~ 23405523 (+) True LOC110529639
XM_036985060.1 mRNA downstream 3933 23585720 ~ 23614904 (+) False LOC110529642
XM_036985063.1 mRNA downstream 3933 23585720 ~ 23614904 (+) False LOC110529642
XM_036985061.1 mRNA downstream 3956 23585743 ~ 23614904 (+) False LOC110529642
XM_036985062.1 mRNA downstream 7194 23588981 ~ 23614904 (+) True LOC110529642
XM_021612034.2 mRNA downstream 165609 23747396 ~ 23756935 (+) False znf512
TU781994 other upstream 57543 23484432 ~ 23524035 (+) True LOC110529640
TU781664 other upstream 608742 22946501 ~ 22972836 (+) False G686448
TU781666 other upstream 608742 22950182 ~ 22972836 (+) False G686448
TU780646 other upstream 1099439 22480323 ~ 22482139 (+) True G685551
TU780557 other upstream 1133505 22446771 ~ 22448073 (+) True G685469
TU782829 other downstream 402658 23984445 ~ 23990999 (+) False LOC110529210
TU782837 other downstream 402658 23984445 ~ 23990999 (+) False LOC110529210
TU784088 other downstream 1400942 24982729 ~ 24984826 (+) True G688613
TU784318 other downstream 1477166 25058953 ~ 25061450 (+) True G688823
TU784988 other downstream 2096865 25678652 ~ 25681727 (+) False LOC110529690

Expression Profile