RNA id: TU783300


Basic Information

Item Value
RNA id TU783300
length 1532
RNA type TUCP
GC content 0.40
exon number 2
gene id G687890
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 23635309 ~ 23637408 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atacatacagtgccttcagaaagtattcagaccccttgactttatccacattttcttatgttacatccttattcaaaaatggataaataaataaaaaatcaacaATCTAAACATCATACCCCATAACGAGAAAATTAACACAGGTTTTTCGAAATGTTAGCTAATTTGTTAAAAATTacaaacagaaatgccttatttacataagtattcagaccctttactatgagactccaaattgagctcaggtgcatcctgtttccattgatcatccttgagatgtttctacaacttgattggagtccacatgtggtaaattcaattgattagacatgatttggaaaaaaacaagtcatgaggtcaaaggaatccgtagagctccgagataggattgtgttgagccacagatctggggaaaggtaccaaaacatttctgcagcattgaaagtccccaagaacacagtggccttcatcattcttaaatggaagaagtttggaagcaccaagactcttcctagagctggccaaactgagcaatcggtggaaaagggccttggtcagggaggtgaccaacatctctggagagacttgaaaatagctgtgcagcaacgttccctatccaacctgacagagcttgagaggatctgcagagaagaatgggagaacctccccaaatacaggtgtgccaagcttgtagcataatatccccccccccaaaattgaggttgtaatcgctgccaaaggtgctttaacaaagtactgagtaaaaggtttgAATTCCTATATGCGATACTAATTAGCAACAATTTCTAATAACCcgtttatgctttgtcattatgctgtattgtgtgtagtttaatgagggggaaaaaacaatcaaatccattttagaataaagctgtaacgtaacaaaatgtggaaaatgtcacggggtcttaatactttccattcatgcactgtatatgctgcatCAGTTGGTCACAGTTTCCTTAAAAAGAAAATGCCTCGTCacagtatttttgtgcattcaaattgccattgataaaatgcaattgtgcttGCCCACGACCACCATTGGGcaatctgttcacaacgttgacatcagcaaaccgctcgccaacacaacgccatacatgtggtctgcggttgtgaggctggttggacgtactgccaaattctctaaaaacaatgttggaggcggcttacggtagaaaaattaacattcaactctgacaacagctctggtggacattcctgcagtcagcatgccaattgcatgcactCTCAAAatgtgagacatctgtggcattgtgttgtgtgataaaactgcacattttagttgccttttattgtccccagtacaagatgcacctgtgtaatgatcatgatgtttaatgAGCTTCTTGACATGCCGCAATTGCGGATGGATTATCAggcggatggattatcttggcaaatgagaaatgctctctaacaggaatgtaagcaaatttgtgcacaaatgtttTTGATAAATATGTTTTTTGTGTGGATGA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU783332 lncRNA downstream 5517 23623145 ~ 23629792 (-) False G687921
TU783333 lncRNA downstream 5517 23623145 ~ 23629792 (-) True G687921
TU783331 lncRNA downstream 12664 23622379 ~ 23622645 (-) True G687920
TU783269 lncRNA downstream 55580 23579575 ~ 23579729 (-) True LOC110529641
TU783313 lncRNA downstream 60622 23574457 ~ 23574687 (-) True G687902
TU783343 lncRNA upstream 25952 23663360 ~ 23663624 (-) True G687931
TU783344 lncRNA upstream 26829 23664237 ~ 23664509 (-) True G687932
TU783346 lncRNA upstream 28553 23665961 ~ 23666177 (-) True G687934
TU783348 lncRNA upstream 30223 23667631 ~ 23667836 (-) True G687936
TU783352 lncRNA upstream 48435 23685843 ~ 23731426 (-) True G687940
XM_021612026.2 mRNA downstream 13365 23614938 ~ 23621944 (-) False LOC110529643
XM_036985069.1 mRNA downstream 13427 23614938 ~ 23621882 (-) False LOC110529643
XM_021612028.2 mRNA downstream 13487 23614938 ~ 23621822 (-) False LOC110529643
XM_036985067.1 mRNA downstream 14751 23614938 ~ 23620558 (-) False LOC110529643
XM_021612024.2 mRNA downstream 52327 23527630 ~ 23582982 (-) False LOC110529641
XM_036985070.1 mRNA upstream 41423 23678831 ~ 23682110 (-) False LOC110529644
XM_036985071.1 mRNA upstream 41423 23678831 ~ 23682110 (-) False LOC110529644
XM_036985078.1 mRNA upstream 41423 23678831 ~ 23682843 (-) False LOC110529644
XM_036985075.1 mRNA upstream 41423 23678831 ~ 23682846 (-) False LOC110529644
XM_036985072.1 mRNA upstream 41423 23678831 ~ 23682852 (-) False LOC110529644
TU783285 other downstream 14063 23616907 ~ 23621246 (-) True LOC110529643
TU781111 other downstream 1474267 22159030 ~ 22161042 (-) False G685953
TU780899 other downstream 1710401 21920427 ~ 21924908 (-) False LOC110529207
TU780900 other downstream 1710401 21920427 ~ 21924908 (-) True LOC110529207
TU779858 other downstream 2156106 21478766 ~ 21479203 (-) True G684844
TU783403 other upstream 117424 23754832 ~ 23756910 (-) True G687979
TU783552 other upstream 350691 23988099 ~ 23988854 (-) True G688109
TU783833 other upstream 787655 24425063 ~ 24425553 (-) False G688366
TU783834 other upstream 787655 24425063 ~ 24425553 (-) True G688366
TU783821 other upstream 801557 24438965 ~ 24440200 (-) True LOC110529658

Expression Profile