RNA id: TU782609


Basic Information

Item Value
RNA id TU782609
length 309
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G687290
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 23668591 ~ 23668899 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aacaagttcaaacaggtgccattaatacaggtaacgagtggaggacagaggagcctcttaaagaagaagttacaggtctgtgagagccagaaatcttgcttgtttgtaggtaaccaaatacttattttccaccataatttgcaaataaattcattaataatcctacaatgtgattttctggatgtttttttctcattttgtctgtcatagttgaagtgtacctatgattaaaattacaggcctctttcatctttttaagtgggagaacttgcacaattggtggctgactaaatacttttttgccccact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU782604 lncRNA upstream 9488 23658063 ~ 23659103 (+) True G687285
TU782593 lncRNA upstream 23938 23643335 ~ 23644653 (+) True G687274
TU782601 lncRNA upstream 29535 23638670 ~ 23639056 (+) True G687282
TU782597 lncRNA upstream 58605 23609168 ~ 23609986 (+) True G687278
TU782587 lncRNA upstream 86804 23581578 ~ 23581787 (+) True G687268
TU782611 lncRNA downstream 3348 23672247 ~ 23672677 (+) True G687292
TU782613 lncRNA downstream 4191 23673090 ~ 23695095 (+) False G687293
TU782612 lncRNA downstream 4511 23673410 ~ 23695095 (+) True G687293
TU782570 lncRNA downstream 9686 23678585 ~ 23722382 (+) True G687251
TU782621 lncRNA downstream 12204 23681103 ~ 23723234 (+) True G687299
XM_036985060.1 mRNA upstream 53687 23585720 ~ 23614904 (+) False LOC110529642
XM_036985063.1 mRNA upstream 53687 23585720 ~ 23614904 (+) False LOC110529642
XM_036985061.1 mRNA upstream 53687 23585743 ~ 23614904 (+) False LOC110529642
XM_036985062.1 mRNA upstream 53687 23588981 ~ 23614904 (+) True LOC110529642
XM_036985059.1 mRNA upstream 147333 23484408 ~ 23521258 (+) False LOC110529640
XM_021612034.2 mRNA downstream 78497 23747396 ~ 23756935 (+) False znf512
XM_036985091.1 mRNA downstream 78607 23747506 ~ 23754689 (+) False znf512
XM_021612033.2 mRNA downstream 78607 23747506 ~ 23756935 (+) False znf512
XM_021612035.2 mRNA downstream 78607 23747506 ~ 23756935 (+) False znf512
XM_021612036.2 mRNA downstream 78607 23747506 ~ 23756935 (+) False znf512
TU781994 other upstream 144556 23484432 ~ 23524035 (+) True LOC110529640
TU781664 other upstream 695755 22946501 ~ 22972836 (+) False G686448
TU781666 other upstream 695755 22950182 ~ 22972836 (+) False G686448
TU780646 other upstream 1186452 22480323 ~ 22482139 (+) True G685551
TU780557 other upstream 1220518 22446771 ~ 22448073 (+) True G685469
TU782829 other downstream 315546 23984445 ~ 23990999 (+) False LOC110529210
TU782837 other downstream 315546 23984445 ~ 23990999 (+) False LOC110529210
TU784088 other downstream 1313830 24982729 ~ 24984826 (+) True G688613
TU784318 other downstream 1390054 25058953 ~ 25061450 (+) True G688823
TU784988 other downstream 2009753 25678652 ~ 25681727 (+) False LOC110529690

Expression Profile