RNA id: TU782570


Basic Information

Item Value
RNA id TU782570
length 1546
lncRNA type read_through
GC content 0.34
exon number 3
gene id G687251
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 23678585 ~ 23722382 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACGCAGCTTGTTTGtcattagccaatcagcatttttCAACGAGTGCAAACGGGTATTTACGACTTGCCAACTGGTAAATACCACCTTCCCAATTAGTTAACAACGCATCATCACTCCTACCCCTGGCTCTCATGGAAGAGACAGTCCACTGTGAGTATTACATTACCTATGGTCACTAGTCTGCTGCTGTCAGGTACAGTGTATGACTATTTGTGCTTCATCAATCACACACTCATAAAGCAACTGAAATTAAATGACTTTAATATTTAAAAGAAGGGCAGTCAAAGCAGAACAAAGTGACAACACAGAATATACTATCAGAGTAGTCCTACAATATTACATGAGCATCATGCCATCTTAAACTACTATACTATCCTGATAGATAGATAGAGGTAGGTAGAGTAGGTGCTTTATTAGgctttattctttatttttaatgTATAATTAAGTCAGTTTATCTGTGTTGTCTGTGTAATGTATATGGTTTATTCATCTGTTGATGTTTAGACCTACTTGCTCTATTTCCATTAGGTTATTATGATAAACCTCATTGTTTCCAGAAAGAAACAATCAAAAATACCAccaaacacaaaaaaacaagaaacataaTGAGCCCAACAACACATGCAAATGGTGATCTCTGGCAACCTGTAAGAGAGTAGAAAACATTAAAAGCTGTATGTCAGTTAGCCACAGTAAAGTACAATTATCACAACAGTCAATGATTCTGAAATGCAAACAATATAACCTCTATAAAAACATGTCATAATTACCAACAACTACATATATGGATTATATAGTTATTAGTTATGAATATAACATGTATATAAGCAACTGTAAATAGTGTAATGTTGTAGAATTTAGTTTTAATTAATGATGGACTTACAACTCCTGTCTGCCCTGATGCAATCAAGGACACTGGAACACACCATCTGGAAATTAAAACAATTGGAAAAAGACACATTGGCTTCAAAACCTTCAGAATAGTATGGAggttgtactgtatatgtactacaTTATTAGCAACATGTAGACCTCTGAATAGGACTTTGACCAACAATACAAAAGAAGAAATCATGAAAATAAAGATAGACCCTGCTTGTAAAGGCACTTGAAATGAGAAAGTGGTGGATGCGGTCAAACACTGCTTCCATCTGTTAACAGTCTGTTTTTCTTACAGGCATCAACACTGATCCCCCAAAAGCAGTTTTCTTAAATGACAAGGGAATGTAAATATTATACATAATGTATATATCATATTAATATATGATTTGTAGCTAGTACTTACCTCCAATAAATGTGTGCTGCGACAGAGAGCTtacaaattacaaaaaaaaatggaTCTCTATAAACTACATGAAATAAAATGAAAAGATGCATCAGACTAAAATATGACATCATACAGTGGTATAAAACTGTTGAGTTAAGTGGCAGCTCCTAAAATGAAAATATACATACTGGCCTGTTTCTGTGATCAGGGATGTCCACGATGGCATCTATCACCTATGAATACAATATTTAAATGTATTGAATAAAGAAGTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU782611 lncRNA upstream 5908 23672247 ~ 23672677 (+) True G687292
TU782609 lncRNA upstream 9686 23668591 ~ 23668899 (+) True G687290
TU782604 lncRNA upstream 19482 23658063 ~ 23659103 (+) True G687285
TU782593 lncRNA upstream 33932 23643335 ~ 23644653 (+) True G687274
TU782601 lncRNA upstream 39529 23638670 ~ 23639056 (+) True G687282
TU782667 lncRNA downstream 13959 23736341 ~ 23736614 (+) True G687334
TU782670 lncRNA downstream 17061 23739443 ~ 23739657 (+) True G687337
TU782677 lncRNA downstream 36751 23759133 ~ 23759472 (+) True G687344
TU782678 lncRNA downstream 37369 23759751 ~ 23795155 (+) True G687345
TU782684 lncRNA downstream 47924 23770306 ~ 23780026 (+) True G687351
XM_036985060.1 mRNA upstream 63681 23585720 ~ 23614904 (+) False LOC110529642
XM_036985063.1 mRNA upstream 63681 23585720 ~ 23614904 (+) False LOC110529642
XM_036985061.1 mRNA upstream 63681 23585743 ~ 23614904 (+) False LOC110529642
XM_036985062.1 mRNA upstream 63681 23588981 ~ 23614904 (+) True LOC110529642
XM_036985059.1 mRNA upstream 157327 23484408 ~ 23521258 (+) False LOC110529640
XM_021612034.2 mRNA downstream 25014 23747396 ~ 23756935 (+) False znf512
XM_036985091.1 mRNA downstream 25124 23747506 ~ 23754689 (+) False znf512
XM_021612033.2 mRNA downstream 25124 23747506 ~ 23756935 (+) False znf512
XM_021612035.2 mRNA downstream 25124 23747506 ~ 23756935 (+) False znf512
XM_021612036.2 mRNA downstream 25124 23747506 ~ 23756935 (+) False znf512
TU781994 other upstream 154550 23484432 ~ 23524035 (+) True LOC110529640
TU781664 other upstream 705749 22946501 ~ 22972836 (+) False G686448
TU781666 other upstream 705749 22950182 ~ 22972836 (+) False G686448
TU780646 other upstream 1196446 22480323 ~ 22482139 (+) True G685551
TU780557 other upstream 1230512 22446771 ~ 22448073 (+) True G685469
TU782829 other downstream 262063 23984445 ~ 23990999 (+) False LOC110529210
TU782837 other downstream 262063 23984445 ~ 23990999 (+) False LOC110529210
TU784088 other downstream 1260347 24982729 ~ 24984826 (+) True G688613
TU784318 other downstream 1336571 25058953 ~ 25061450 (+) True G688823
TU784988 other downstream 1956270 25678652 ~ 25681727 (+) False LOC110529690

Expression Profile