RNA id: TU783357



Basic Information


Item Value
RNA id TU783357
length 249
lncRNA type sense_over
GC content 0.36
exon number 2
gene id G687945
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 23692840 ~ 23728805 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


catacaatcaataatacagtagaaaaatatacagcatgtgcaaatgaggtaggataagagaggtaaggcaataaataggccatggtggcgaagtaattacaatatagcaattaaacactggaatggtagaatgtgcagaagatgaatgtgcacgTAGAGATACTGGattgcaaaggagcaagataaataaataaatacagtatggggatgaggtagattgaatgggctatttacagatgagctatgtac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU783348 lncRNA downstream 25004 23667631 ~ 23667836 (-) True G687936
TU783346 lncRNA downstream 26663 23665961 ~ 23666177 (-) True G687934
TU783344 lncRNA downstream 28331 23664237 ~ 23664509 (-) True G687932
TU783343 lncRNA downstream 29216 23663360 ~ 23663624 (-) True G687931
TU783333 lncRNA downstream 63048 23623145 ~ 23629792 (-) True G687921
TU783376 lncRNA upstream 7255 23736060 ~ 23736363 (-) True G687964
TU783378 lncRNA upstream 8901 23737706 ~ 23737906 (-) True G687966
TU783381 lncRNA upstream 14515 23743320 ~ 23743743 (-) True G687969
TU783382 lncRNA upstream 15768 23744573 ~ 23744774 (-) True G687970
TU783383 lncRNA upstream 16090 23744895 ~ 23745118 (-) True G687971
XM_036985074.1 mRNA downstream 9978 23678831 ~ 23682862 (-) False LOC110529644
XM_036985076.1 mRNA downstream 9978 23678831 ~ 23682862 (-) False LOC110529644
XM_036985077.1 mRNA downstream 9978 23678831 ~ 23682862 (-) True LOC110529644
XM_036985073.1 mRNA downstream 9986 23678831 ~ 23682854 (-) False LOC110529644
XM_036985072.1 mRNA downstream 9988 23678831 ~ 23682852 (-) False LOC110529644
XM_021614355.2 mRNA upstream 63194 23791999 ~ 23805391 (-) True LOC110531080
XM_021612041.2 mRNA upstream 154265 23883070 ~ 23908519 (-) False trim54
XM_021612040.2 mRNA upstream 157059 23885864 ~ 23908520 (-) True trim54
XM_021612048.2 mRNA upstream 181696 23910501 ~ 23928808 (-) False LOC110529650
XM_036985092.1 mRNA upstream 181696 23910501 ~ 23928808 (-) False LOC110529650
TU783300 other downstream 55432 23635309 ~ 23637408 (-) True G687890
TU783285 other downstream 71594 23616907 ~ 23621246 (-) True LOC110529643
TU781111 other downstream 1531798 22159030 ~ 22161042 (-) False G685953
TU780899 other downstream 1767932 21920427 ~ 21924908 (-) False LOC110529207
TU783403 other upstream 26027 23754832 ~ 23756910 (-) True G687979
TU783552 other upstream 259294 23988099 ~ 23988854 (-) True G688109
TU783833 other upstream 696258 24425063 ~ 24425553 (-) False G688366
TU783834 other upstream 696258 24425063 ~ 24425553 (-) True G688366
TU783821 other upstream 710160 24438965 ~ 24440200 (-) True LOC110529658

Expression Profile