RNA id: TU782670


Basic Information

Item Value
RNA id TU782670
length 215
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G687337
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 23739443 ~ 23739657 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTAGATGCCTCCCGGTAGCCAGGAATAGATTGTAAAATTCTCGCACAGATATGTTAAATTGCAGTTGGAAAGCCTTAGCAGGGACCTGACGTCCGTCCTGACAGAGAGCTACATACTCTGCATTGAAGTGTTCAAAATTAAATGGGTTTTTATGTAAGCTGCCCGTATTAGAGGCGTTATCCCCCAATCCTATAACAATGTATCAGGGTAGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU782667 lncRNA upstream 2829 23736341 ~ 23736614 (+) True G687334
TU782621 lncRNA upstream 16209 23681103 ~ 23723234 (+) True G687299
TU782570 lncRNA upstream 17061 23678585 ~ 23722382 (+) True G687251
TU782615 lncRNA upstream 41971 23681225 ~ 23697472 (+) True G687295
TU782613 lncRNA upstream 44348 23673090 ~ 23695095 (+) False G687293
TU782677 lncRNA downstream 19476 23759133 ~ 23759472 (+) True G687344
TU782678 lncRNA downstream 20094 23759751 ~ 23795155 (+) True G687345
TU782684 lncRNA downstream 30649 23770306 ~ 23780026 (+) True G687351
TU782776 lncRNA downstream 170895 23910552 ~ 23913767 (+) False G687438
TU782777 lncRNA downstream 170895 23910552 ~ 23913767 (+) False G687438
XM_036985060.1 mRNA upstream 124539 23585720 ~ 23614904 (+) False LOC110529642
XM_036985063.1 mRNA upstream 124539 23585720 ~ 23614904 (+) False LOC110529642
XM_036985061.1 mRNA upstream 124539 23585743 ~ 23614904 (+) False LOC110529642
XM_036985062.1 mRNA upstream 124539 23588981 ~ 23614904 (+) True LOC110529642
XM_036985059.1 mRNA upstream 218185 23484408 ~ 23521258 (+) False LOC110529640
XM_021612034.2 mRNA downstream 7739 23747396 ~ 23756935 (+) False znf512
XM_036985091.1 mRNA downstream 7849 23747506 ~ 23754689 (+) False znf512
XM_021612033.2 mRNA downstream 7849 23747506 ~ 23756935 (+) False znf512
XM_021612035.2 mRNA downstream 7849 23747506 ~ 23756935 (+) False znf512
XM_021612036.2 mRNA downstream 7849 23747506 ~ 23756935 (+) False znf512
TU781994 other upstream 215408 23484432 ~ 23524035 (+) True LOC110529640
TU781664 other upstream 766607 22946501 ~ 22972836 (+) False G686448
TU781666 other upstream 766607 22950182 ~ 22972836 (+) False G686448
TU780646 other upstream 1257304 22480323 ~ 22482139 (+) True G685551
TU780557 other upstream 1291370 22446771 ~ 22448073 (+) True G685469
TU782829 other downstream 244788 23984445 ~ 23990999 (+) False LOC110529210
TU782837 other downstream 244788 23984445 ~ 23990999 (+) False LOC110529210
TU784088 other downstream 1243072 24982729 ~ 24984826 (+) True G688613
TU784318 other downstream 1319296 25058953 ~ 25061450 (+) True G688823
TU784988 other downstream 1938995 25678652 ~ 25681727 (+) False LOC110529690

Expression Profile