RNA id: TU783385



Basic Information


Item Value
RNA id TU783385
length 277
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G687973
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 23746445 ~ 23746721 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GACTTTAGGAGTGAACTACGGGCTTGAAGACTGGCCGGTTTTTCGCAAGGTTGTGTGTCCCGAACAGAGAGTTAACACAAAGGGGTATAGCTTGATCACGGGCTACGAGACCCGTTGGGAAGGTGCCCCTGACTCCTCGGGAAGAATATTTCACAGGTtgaaaatacaaagaaagaatGGACTTCCATGTGGATGCGTGGAGTTCTATATCAGCAACGAGGaaacccgcaaccaaaacattcgTGATGGTGGCCTGACTGGGGATTTTATGTTGCGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU783383 lncRNA downstream 1327 23744895 ~ 23745118 (-) True G687971
TU783382 lncRNA downstream 1671 23744573 ~ 23744774 (-) True G687970
TU783381 lncRNA downstream 2702 23743320 ~ 23743743 (-) True G687969
TU783378 lncRNA downstream 8539 23737706 ~ 23737906 (-) True G687966
TU783376 lncRNA downstream 10082 23736060 ~ 23736363 (-) True G687964
TU783429 lncRNA upstream 42509 23789230 ~ 23843104 (-) True G688000
TU783454 lncRNA upstream 76184 23822905 ~ 23823457 (-) True G688024
TU783470 lncRNA upstream 96447 23843168 ~ 24094930 (-) True G688038
TU783618 lncRNA upstream 337339 24084060 ~ 24116642 (-) True G688167
TU783642 lncRNA upstream 370819 24117540 ~ 24117785 (-) True G688191
XM_036985083.1 mRNA downstream 14289 23719610 ~ 23732156 (-) False LOC110529645
XM_036985081.1 mRNA downstream 22212 23719616 ~ 23724233 (-) False LOC110529645
XM_036985079.1 mRNA downstream 22212 23719617 ~ 23724233 (-) False LOC110529645
XM_036985082.1 mRNA downstream 22212 23719617 ~ 23724233 (-) False LOC110529645
XM_036985080.1 mRNA downstream 22213 23719622 ~ 23724232 (-) True LOC110529645
XM_021614355.2 mRNA upstream 45278 23791999 ~ 23805391 (-) True LOC110531080
XM_021612041.2 mRNA upstream 136349 23883070 ~ 23908519 (-) False trim54
XM_021612040.2 mRNA upstream 139143 23885864 ~ 23908520 (-) True trim54
XM_021612048.2 mRNA upstream 163780 23910501 ~ 23928808 (-) False LOC110529650
XM_036985092.1 mRNA upstream 163780 23910501 ~ 23928808 (-) False LOC110529650
TU783300 other downstream 109037 23635309 ~ 23637408 (-) True G687890
TU783285 other downstream 125199 23616907 ~ 23621246 (-) True LOC110529643
TU781111 other downstream 1585403 22159030 ~ 22161042 (-) False G685953
TU780899 other downstream 1821537 21920427 ~ 21924908 (-) False LOC110529207
TU783403 other upstream 8111 23754832 ~ 23756910 (-) True G687979
TU783552 other upstream 241378 23988099 ~ 23988854 (-) True G688109
TU783833 other upstream 678342 24425063 ~ 24425553 (-) False G688366
TU783834 other upstream 678342 24425063 ~ 24425553 (-) True G688366
TU783821 other upstream 692244 24438965 ~ 24440200 (-) True LOC110529658

Expression Profile