RNA id: TU783552


Basic Information

Item Value
RNA id TU783552
length 519
RNA type TUCP
GC content 0.49
exon number 2
gene id G688109
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 23988099 ~ 23988854 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTGACGTGTAGCTTAGCAGGGACAGGAACCTCGGAGATGTCCGTGTCCTGGAAATCAGAGTGGTCCAGTTTCCCTTCATCTATCCCATTAGACAGATCCAGGAAGTGGTTGAGGAAGATAAAGGACATGTTCTCCTAGCCCACAGCCTGTAGAGAGAATCAATAGTTCAGCGAGTTGGGAGAGATTGACATTCTCCTAAattatttcatttttgttcatttcccccaaaaatgtaattcTGAAAATGGACGATGCGATAAGCTACTTCATACTGCTGTTTGAGTACAACATTATTCATAACACCTCCAGCGGCCCTACCAGGAGCACAGACTCAGGGGACTTTGATCAGAGTAGTTCCCAGGGGACTCCAGCAACAACAACCCCCCCGCTTCCAGTGATTGGCCGAAGCTCATACGAGCAGTTCTCATACCCTGGCAGCCATGCCCGCCTTGTAGAAGGCCTTGTCAGCTGGGATAAACTCTGTGTGGCGCAGCAGGGAGATAGACAGCTTGGCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU783429 lncRNA downstream 144995 23789230 ~ 23843104 (-) True G688000
TU783454 lncRNA downstream 164642 23822905 ~ 23823457 (-) True G688024
TU783385 lncRNA downstream 241378 23746445 ~ 23746721 (-) True G687973
TU783383 lncRNA downstream 242981 23744895 ~ 23745118 (-) True G687971
TU783382 lncRNA downstream 243325 23744573 ~ 23744774 (-) True G687970
TU783618 lncRNA upstream 95206 24084060 ~ 24116642 (-) True G688167
TU783642 lncRNA upstream 128686 24117540 ~ 24117785 (-) True G688191
TU783643 lncRNA upstream 129359 24118213 ~ 24118420 (-) True G688192
TU783796 lncRNA upstream 390449 24379303 ~ 24401141 (-) False G688338
TU783797 lncRNA upstream 409783 24398637 ~ 24401141 (-) True G688338
XM_021612045.2 mRNA downstream 32341 23952710 ~ 23955758 (-) True si:dkey-221h15.4
XM_021612042.2 mRNA downstream 35581 23928936 ~ 23952518 (-) True cpsaseii
XM_021612043.2 mRNA downstream 35582 23928936 ~ 23952517 (-) False cpsaseii
XM_021612044.2 mRNA downstream 35582 23928936 ~ 23952517 (-) False cpsaseii
LOC118965656 mRNA downstream 42196 23945776 ~ 23945903 (-) True LOC118965656
XM_021612053.2 mRNA upstream 136904 24125758 ~ 24194452 (-) False LOC110529653
XM_021612052.2 mRNA upstream 136904 24125758 ~ 24243875 (-) False LOC110529653
XM_021612056.2 mRNA upstream 167511 24156365 ~ 24243880 (-) True LOC110529653
XM_021612057.2 mRNA upstream 294537 24283391 ~ 24290109 (-) True LOC110529654
XM_021612063.2 mRNA upstream 309088 24297942 ~ 24397834 (-) False ncoa1
TU783403 other downstream 231189 23754832 ~ 23756910 (-) True G687979
TU783300 other downstream 350691 23635309 ~ 23637408 (-) True G687890
TU783285 other downstream 366853 23616907 ~ 23621246 (-) True LOC110529643
TU781111 other downstream 1827057 22159030 ~ 22161042 (-) False G685953
TU780899 other downstream 2063191 21920427 ~ 21924908 (-) False LOC110529207
TU783833 other upstream 436209 24425063 ~ 24425553 (-) False G688366
TU783834 other upstream 436209 24425063 ~ 24425553 (-) True G688366
TU783821 other upstream 450111 24438965 ~ 24440200 (-) True LOC110529658
TU783950 other upstream 640700 24629554 ~ 24631049 (-) True G688480
TU784009 other upstream 692113 24680967 ~ 24681426 (-) True G688537

Expression Profile